Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04561 ATGTCTAGAGAAGTCATGGCTACTTCATCTGCTGCTCCTTTTGATTATGAGATCTTGGATAAAGATCCTGAGACCCCTAGAGCACCTGTGGTTCAATCCAATCGGACGAATCCGTGGATTGAGCCTGAAACTTTGAAACTTCAGCATCGGATTGGTCGAGGACCCTTTGGTGATGTTTGGCTTGCAACTCTTCATCAGTCAACTGACGATTATGATGAACATCATGAAGTTGCTGCTAAGATGTTGTATCCGGTTAGAGAGGATCATGTGAAGATTGTACTGGAGAAGTTTAGTGATTTGTACTTTAAGTGCCGAGGAGTTTCTAGTGTTTCGTGGATACATGGAGTTTCAATGATCAATGGAAGGATCTGCATCATTATGAAGTTGTATGAAGGTTCAATTGGTGACAAGATGGCTAGATTAAGAGAAGGATGGATTTCATTACATGATGTTTTGAGGTATGGGATCAATCTGGCTCAAGGTATTCTGGAGCTTCACTCTAAGGGGATCCTTGTTCTGAACCTTAAACCTTGCAATGTTCTTCTCAATGACAATGGTCAAGCGATTTTAGGAGATGTTGGTATTCCAAATCTTTTGCTTGGTTCCTCATTCGTTAGCTCAGATATCGCTCAGAGGCTTGGAACTCCTAATTACATGGCTCCAGAACAATGGAAACCAGAAGTTGGAGGTCCTATATCAATTGAAACGGATTCATGGGGATTTGGTTGCACCATTGTTGAAATGTTGACTGGTAGTCAGCCTTGGTACGGATGCCCTGTTGGTGGAATTTATGGATCAGTTGTTGAAAAGCATGAAAAGCCGCTTATCCCAAGTGGCCTTCCTTCTCCCATCGAGAATATCCTTAGTGGCTGTTTTGAGTATGATTTAAGAAACCGCCCTTTGATGGTAGATATTCTGCGCGTCTTTAAAAGCTCGCTGAGTAAACTGGGCAATGACGGAGGATGGAGATATCAAGGAAATATGAAAGTAATTGCAAAATCAGGCAGCACTGAGTACACCGAATGGTTCCTCTCAAAGGATCACCTGCAGGTGGGCGACATGGTCCGATCCAGAAAGTCTCCCAACTCATGCAAAGCTCAAAACATGGATGTCCCAGAAGGAACTGTCGTTGGTCTAGAACGTACTGCAGATCACGGATTCGTTCTTGTGAGGGTCCACGGTATTCACGACCCTATAAGAATTCATGTGTCAACTCTCGAACGGGTCACTGATGGCTTGGCAGCTGGTGATTGGGTACGTGTTAAAGACAAAAACCAGAAGCACTCGCCAGTTGGCATTCTACATACCATCAATCGTGATGATGGTAGAGCTGCTGTTGGATTTATCGGGCTGCAAACTCTCTGGAACGGAAACCCTTCTGACCTCGAAATGTCAGAATCATTCTGTGTAGGACAGTTCGTTAGGCCAAAAGAGAATATCTTAAGCCCTCGATTCGAATGGCGTCGTAAAAGGGGAGGGGCCTCAGCTACCGGTCGGATTTCGTGGATTCTTCCAAATGGGTGTTTGGTAATCAAGTTCCCAGGGTTGCTGACTTTTGGAAACGAATCAAACACCTTTTTGGCTGATCCTTCTGAAGTTGAAGTGGTTGATTTCAAGGCTTGTCCTGGGATTATAGAAAAGTATCAACATGTCGAGGATCATCACTGGGCAGTTAGACCTGTTCTAGTTGCACTTGGCATATTAACAGCTTTGAAACTAGGTATATTAGCTGGAAACAAAGTAAGGAGGTGCAAGAAGTTTAATGCAATAATAGAAAGCAAAAACCCACATCTTGAAGGTCAAAACCCCAATAGTCCTACAAGGAATATAATAAGTCATGGCAACACAACCTGGGTTCCTTCAGTTGCTAATATCCTTTTTAAAGATGGTGCTTAA 1896 0.4341 MSREVMATSSAAPFDYEILDKDPETPRAPVVQSNRTNPWIEPETLKLQHRIGRGPFGDVWLATLHQSTDDYDEHHEVAAKMLYPVREDHVKIVLEKFSDLYFKCRGVSSVSWIHGVSMINGRICIIMKLYEGSIGDKMARLREGWISLHDVLRYGINLAQGILELHSKGILVLNLKPCNVLLNDNGQAILGDVGIPNLLLGSSFVSSDIAQRLGTPNYMAPEQWKPEVGGPISIETDSWGFGCTIVEMLTGSQPWYGCPVGGIYGSVVEKHEKPLIPSGLPSPIENILSGCFEYDLRNRPLMVDILRVFKSSLSKLGNDGGWRYQGNMKVIAKSGSTEYTEWFLSKDHLQVGDMVRSRKSPNSCKAQNMDVPEGTVVGLERTADHGFVLVRVHGIHDPIRIHVSTLERVTDGLAAGDWVRVKDKNQKHSPVGILHTINRDDGRAAVGFIGLQTLWNGNPSDLEMSESFCVGQFVRPKENILSPRFEWRRKRGGASATGRISWILPNGCLVIKFPGLLTFGNESNTFLADPSEVEVVDFKACPGIIEKYQHVEDHHWAVRPVLVALGILTALKLGILAGNKVRRCKKFNAIIESKNPHLEGQNPNSPTRNIISHGNTTWVPSVANILFKDGA 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04561 631 CDD STKc_PknB_like 46 311 - -
Vifa3g04561 631 Pfam Protein tyrosine and serine/threonine kinase 45 307 IPR001245 GO:0004672|GO:0006468
Vifa3g04561 631 SUPERFAMILY Protein kinase-like (PK-like) 43 311 IPR011009 -
Vifa3g04561 631 Gene3D Phosphorylase Kinase; domain 1 23 127 - -
Vifa3g04561 631 Gene3D Transferase(Phosphotransferase) domain 1 131 348 - -
Vifa3g04561 631 ProSiteProfiles Protein kinase domain profile. 45 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04561 631 PANTHER OS06G0639500 PROTEIN 1 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04561 Vifa-Chr3 1307241792 1307244740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04561 31 317 MAP Kinase Kinase Kinase AT2G17700 26.027 2.92e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Vifa3g04561 PK_Tyr_Ser-Thr 7.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04561 - - gsj:114393396 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04561 3 1307241792 1307244740 Vifa3g04561 3 1307241792 1307244740 ECH