Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04556 ATGCAAAATCATAGGACTTGGTTGTGTTTATGTATCCTACTTTTGTCTAAAGTAGTTTTGGTTTTCTGTGGTATTCAATGGATTGGGAAGATCTCACCTGGATTTGGGGGGTCACAGATGAATTGGATTGATAAGAATGGAAAGTTTCTTGTCTCAAACAAAAAACAATTTGGTTTTGGCTTTGTAACATCTTCACACAACAACACATTGTTTCATCTTGCAATAGTCCACATGGATAGCACCAAAATCATTTGGACTGCAAATAGAGAATCTGCTGTTTCAAGTTCTGATAAATTTGTGTTTGATGAAAAGGGTAATGTTTTTTTACAAAAAGGAAAGTTTTTTATTTGGTCAACAAACACAAGTAACATGAAGGTTTCTTCAATGAAGTTACAAGATAATGGAAACTTAGTTTTGCTTGGAAATGATGATAGTGATGTGATTTGGCAAAGCTTTGATCATCCAACAGATACTTTGTTGCCAATGCAAAACTTCACCAAGGGAATGAGACTTATCAGTGAACAAGATTCTTCTAACAATTTGAGTTATGTGCTTGAAATTGAATCTCATTCTGGTAATGTTGTTCTTTCCAGTGGTTTACAATCTCCACAAAGTTATTGGTCTATGCAAAAAGATATCCGAAGAATCGTCAATGAGAACGGCGATGATGTTGCTTTTGCAACTCTTGATGCAAATTCATGGAAATTCTATGATAATAAGAGATCTTTGTTGTGGCAATTTATCATTGCTGATGATGTTTCAAATGCAACATGGATTGCGGTTTTGGGAAGTGATGGATTTATTACTTTCATGAATCTTCAAAACAAAAACTCAATTGCTTCATCAACAAGAATACCACAAGATTCTTGTAGTACACCACAGCCTTGTGGTTCTTACAATGTATGCTTTGGTGACAGAAAATGTACTTGTCCTTCTATTCTTAGCTCTAGACCTAGTTGCGAACCGGGTTTTGCTTCGCCTTGTAACTCGAAAAATTCTATTGAGTTAGTGAAAGGTGATGATGGACTTAATTACTTTGCTCTTGGATTTCTTCAACCTTCTTCGAAAACCGATTTGATTGGTTGCAAAAATTCTTGTAGTGAGAATTGTTCATGTCTTGCTATGTTCTTTCATGGGAGTTCAGGTAACTGTTATATGTTAGATAGGATTGGAAGCTTTGTGAAAACTGATAATGATACTGGTTTTGTCTCTTACATTAAAGTCTCAAGAGACAAAAGCACTGACACAGACACGAACACAGAAGAGAACGGCAACAAGAATAAGCAGACAATAGTTGTTCTGATCATTGTGGTATTAACATTGTTTGTCATTTCTGGCATGATCTATGTGGGACTAAAATACATAAAGAAAAAGGAAAATTTGTCTGAACCTCCAGCCGAAGATTCAGACAACGATGACGATTTCTTGGAGAGTTTAACTAGTATGCCAATCCGTTTCACCTACAACGATCTAGAAGCCGCGACGAATAACTTCGTGGTGAAGTTAGGTCAAGGTGGTTTCGGCTCTGTTTATAAGGGAAGTCTTTCAGATGGAACACAAATAGCTGTGAAAAAGTTAGAAGGAATAGGTCAAGGGAAGAAAGAATTTAGAGTTGAAGTTAGCATTATTGGAAGCATTCATCATCATCATTTGGTAAGGCTTAAAGGGTTTTGTGCTGAAGGATCTCATAAACTTCTTGTTTATGAGTATATGGAAAATGGTTCCTTGGATAAATGGATATTCAAAAAAAGAGAGCAATCTTTGGATTGGAACACAAGGTACAACATTGCACTAGGAACAGCTAAAGGACTAGCTTATCTACATGAAGATTGTGATTCAAAGATTGTTCATTGTGATATCAAACCAGAAAATGTGCTTTTAGACAATAATTTCGAAGCCAAAGTATCCGATTTCGGTCTCGCGAAACTCATGAACCGCGAACAAAGCCATGTTTTCACAACAATGAGAGGAACAAGAGGGTACTTAGCACCAGAATGGATCACAAACTATGCTATATCAGAGAAAAGTGATGTTTATAGCTATGGAATGGTGCTGTTAGAGATAATAGGTGGAAGGAAAAACTATGATGCTAATGAAAATTCGGAGAAATCGCATTTTCCTTCTTATGCCTATAAGATGATGGAACAAGGGAAGGTGGAAGATTTGGTTGATCATGAGATGAAAATGTGTGAAAATGATGTGAGAGTTGAGATTGCTTTGAATGTTGCATTTTTGTGTATACAAGAAGATATGAGTTTGAGGCCTTCTATGAATAAAGTTGTGCAAATGCTTGAGGGTTTATGTGATGTTCCTAAGGTACCAAAAGGTTCTCCATTAGGTTCTAAGTTTTATTTGAATTTGCTTAGACCTACAAGTGAGAGTGGAACTTCTTCAGAACCATTAGAGGGGTATAGTGATGCATATCTATCTGCTGTTAGGCTTTCAAGACCAAGATAA 2457 0.3622 MQNHRTWLCLCILLLSKVVLVFCGIQWIGKISPGFGGSQMNWIDKNGKFLVSNKKQFGFGFVTSSHNNTLFHLAIVHMDSTKIIWTANRESAVSSSDKFVFDEKGNVFLQKGKFFIWSTNTSNMKVSSMKLQDNGNLVLLGNDDSDVIWQSFDHPTDTLLPMQNFTKGMRLISEQDSSNNLSYVLEIESHSGNVVLSSGLQSPQSYWSMQKDIRRIVNENGDDVAFATLDANSWKFYDNKRSLLWQFIIADDVSNATWIAVLGSDGFITFMNLQNKNSIASSTRIPQDSCSTPQPCGSYNVCFGDRKCTCPSILSSRPSCEPGFASPCNSKNSIELVKGDDGLNYFALGFLQPSSKTDLIGCKNSCSENCSCLAMFFHGSSGNCYMLDRIGSFVKTDNDTGFVSYIKVSRDKSTDTDTNTEENGNKNKQTIVVLIIVVLTLFVISGMIYVGLKYIKKKENLSEPPAEDSDNDDDFLESLTSMPIRFTYNDLEAATNNFVVKLGQGGFGSVYKGSLSDGTQIAVKKLEGIGQGKKEFRVEVSIIGSIHHHHLVRLKGFCAEGSHKLLVYEYMENGSLDKWIFKKREQSLDWNTRYNIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDNNFEAKVSDFGLAKLMNREQSHVFTTMRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDANENSEKSHFPSYAYKMMEQGKVEDLVDHEMKMCENDVRVEIALNVAFLCIQEDMSLRPSMNKVVQMLEGLCDVPKVPKGSPLGSKFYLNLLRPTSESGTSSEPLEGYSDAYLSAVRLSRPR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04556 818 SMART serkin_6 496 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04556 818 SMART blect_4 41 155 IPR001480 -
Vifa3g04556 818 ProSitePatterns Protein kinases ATP-binding region signature. 502 525 IPR017441 GO:0005524
Vifa3g04556 818 ProSiteProfiles Protein kinase domain profile. 496 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04556 818 SUPERFAMILY Protein kinase-like (PK-like) 476 765 IPR011009 -
Vifa3g04556 818 CDD STKc_IRAK 502 767 - -
Vifa3g04556 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Vifa3g04556 818 PIRSF SRK 3 812 IPR024171 GO:0004674
Vifa3g04556 818 FunFam serine/threonine-protein kinase PBS1-like 465 570 - -
Vifa3g04556 818 CDD PAN_AP_plant 354 409 - -
Vifa3g04556 818 FunFam Serine/threonine-protein kinase 37 153 - -
Vifa3g04556 818 Gene3D Phosphorylase Kinase; domain 1 466 570 - -
Vifa3g04556 818 ProSiteProfiles Bulb-type lectin domain profile. 35 152 IPR001480 -
Vifa3g04556 818 Gene3D - 42 154 IPR036426 -
Vifa3g04556 818 Gene3D Transferase(Phosphotransferase) domain 1 571 773 - -
Vifa3g04556 818 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 41 774 - -
Vifa3g04556 818 Pfam D-mannose binding lectin 83 166 IPR001480 -
Vifa3g04556 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 173 IPR036426 -
Vifa3g04556 818 CDD B_lectin 43 155 IPR001480 -
Vifa3g04556 818 Pfam Protein kinase domain 500 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04556 818 FunFam S-receptor-like kinase 5 571 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04556 Vifa-Chr3 1305840863 1305843319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04556 475 774 Receptor kinase-like Gene Family AT5G20050 46.688 5.64e-88 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa3g04556 Pkinase 5.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04556 - - gmx:100787500 1124.77