Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04534 ATGAATCACTTCTCTTTCTTTTTTATATTTTTTTATGTATACTTTTGTTATCTCCCAAACAAAACTTTAGCAATGACCTTAACGCTACAAAACCAAACTGATCACCAAGCATTGCTCCAATTCAAACACTCAATAACCAATTATCCAAATGGAGTCCTAGACTCTTGGAATTCCTCCACACACTTTTGCAAATGGCATGGAATCACATGCAACCCCATGCATCAAAGAGTCACAAAGTTGAACTTACAAGGTAACAACTTGTATGGTTCCATTTCACCTTTTATTGGAAACCTCTCTCGTTTAAGAAACATCAACCTCGAAAACAATAGCTTCACCAAAAAAATTCCACACGAACTCGGCCAGTTGTTAAAACTAAATCAACTCTCTTTGGGCAATAACATGTTTTTAGGAGACATTCCTAAGAGCTTGTCAAATTGCTCCAATCTTAAAGTCTTGCATTTGCTTAAAAACAATCTCACCGGAAACATACCAACCGAATTCGCCTCTCTTCAAAAGCTTCTCAAAATAAACATAGGAAAAAACCGTTTAACCGGAGGAGTTCCTTCTTTTATAAGTAACCTTTCTTCCTTGACAAGTCTTGTTCTTTTTTTCAACAACTTAGAGGGAAATATTCCACAAGAAATATGTCTCCTAAGAAACTTGAGAAATATATCGGTTGACGTGAACAAATTATCAGGTACATTTCCACCTTGTTTTTATAATATGTCATCTCTTGAATCGATCTCATTTGCTGAGAATCGCTTCAACGGTTATCTTCCGTGGAATATGTTCTATACATTACCATATCTCAAAGATTTTAGAATGGGACATAATTTATTCTCTGGCAAAATCCCTACTTCCATTGCAAATGCTTCTACTTTGAAAACATTTGACATTGGTCAAAACTCTTTACGTGGACAAGTTCCAAGTCTAGGGAAGCTACGAGATCTTGATTTGTTAAATCTCGAGATCAACATTCTAGGTAGCAATTCAACTAAAGATTTAGATTTTTTGAAAACATTGACAAATTGTACTAAGTTACGAATTCTTAGTATAACTGCCAATAGTTTTGGAGGTTTTCTTCCAAATTCTATAGGCAATTTTTCCCACCACCTTTATGAACTATACCTTGGGGGTAATGAGATATCAGGAGAAGTTCCTAAAGGGTTAGGAAATCTAGCAAACTTAATCATCTTGAGCTTGGGACACAACCACTTTGAAGGAACTATTCCAACAAGTTTTGGACAGTTCAAGAAAATGCAAATGTTAGATTTGCGCCAAAACAATTTTTCGGGGGAAATACCGAGTTTCATAGGCAATCTCAGTCAGTTGTTTGATCTGCGGATGGAAGAAAACATGTTTGAAGGAAATATTCCTTTGAGTATAGGGAAGTGTCAAATGTTGCAATTTCTAAGCCTTTCACACAACAATCTTCGAGGACCAATACCTTTAGAAGTTTTTCGAATTCCGTCCTTAGCAAAGCTAGATGTCTCTGAAAATCGTCTGTCTGGTGAGATACCAAGAACCATATATGGATGCTTAAGCTTAAAGTACCTTGGTTTGCAAGGTAACTCGCTTAACGGAACCATACCTTCCAAATTGTCAGATCTCAAAGGTCTTCAATATTTAGACTTGTCCAGAAACCAATTGTCTGGAACAATTCCGAATGACTTGGAGAATATGGATCTTCTAGAATACTTGAATGTATCTTTCAACAAGTTGGAAGGTGAGGTTCCGATCAAAGGTGTATTTCAAAATGCAAGTCGGATAGCAGTGACAGGAAACAATAAGCTTTGTGGAGGAATTTTAGAGTTGCATCTATCACCATGCCCTGCCAACCTCATAAAACCTACAAAACACCAAAATTTGAAATTGGCAGCAGTGATCATTAGTGTGATTGTTTTCCTTATACTCATGTTAGCTCTAACCATCTACTTGATGAGGAAAAGAAATAGAAAATCATCTTTTGATACACCGAGAATTGAACAACTAGATAAGGTTTCATACCAAGAACTATATCAAGGAACCGACGGGTTCTCAGATAGAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTGTACAAAGGAAATCTTGCATCACAAGATAAAGTTGTTGCTATAAAGGTTCTGAACCTTAAAAAGAAAGGAGCACACAAGAGTTTTATCGCGGAATGTAATGCACTAAAAAATATCAGACATCGAAATTTGGTCAAGGTTTTAACATGTTGTTCTAGTACTGATTACAAAGGTGAAGAATTCAAGGCTTTAGTTTTTGATTATATGAAAAACGGAAGCTTAGAAGACTGGCTTCATCCGCGGTCATCAAATTCAGAACATCAAAGAATGTTGAGCCTTGTTCAAAGATTAAACATCATGATTGATATTGCTTATGCGTTACATTATCTTCATCGCGAATGTGAGCAAATAGTCCTTCACTGTGATATAAAGCCGAGCAACATCCTTCTGGACGATGACATGGTTGCTCGCGTGAGTGATTTTGGCATAACGAAACTTGTCTCGGTCGTTGATGATACATCTTATAAGGAAACTAGTACTGTCAGGCTAAAAGGGACCATTGGTTATGCTCCTCCAGAGTATGGAATGAGTTCTGAAGTATCGAGCTACGGTGACATGTATAGCTTTGGAATACTCGTGTTGGAAATGATTATTGGAAGACGACCAACGGATGAAATGTTTGAAGATGGTGAAAATCTGCATACTTTTGTTAAGAACTCATTTCATGGTAGTATTATGCAGATTTTGGATACAAATCTTGTTGTACCAAGAGATACAGAGGCAAGAGTGGAGAAGTGCTTAGTTTCAGTTCTAAGGATTGGAATTGCTTGTTCAATGGAATCACCCAAAGAAAGAATGAACATAGTAGATGTTACTAAAGAGTTGGATATAATCAAGATGGTCTTTCTTGATGGTGAGAGAAGAGAAGATTGA 2949 0.3666 MNHFSFFFIFFYVYFCYLPNKTLAMTLTLQNQTDHQALLQFKHSITNYPNGVLDSWNSSTHFCKWHGITCNPMHQRVTKLNLQGNNLYGSISPFIGNLSRLRNINLENNSFTKKIPHELGQLLKLNQLSLGNNMFLGDIPKSLSNCSNLKVLHLLKNNLTGNIPTEFASLQKLLKINIGKNRLTGGVPSFISNLSSLTSLVLFFNNLEGNIPQEICLLRNLRNISVDVNKLSGTFPPCFYNMSSLESISFAENRFNGYLPWNMFYTLPYLKDFRMGHNLFSGKIPTSIANASTLKTFDIGQNSLRGQVPSLGKLRDLDLLNLEINILGSNSTKDLDFLKTLTNCTKLRILSITANSFGGFLPNSIGNFSHHLYELYLGGNEISGEVPKGLGNLANLIILSLGHNHFEGTIPTSFGQFKKMQMLDLRQNNFSGEIPSFIGNLSQLFDLRMEENMFEGNIPLSIGKCQMLQFLSLSHNNLRGPIPLEVFRIPSLAKLDVSENRLSGEIPRTIYGCLSLKYLGLQGNSLNGTIPSKLSDLKGLQYLDLSRNQLSGTIPNDLENMDLLEYLNVSFNKLEGEVPIKGVFQNASRIAVTGNNKLCGGILELHLSPCPANLIKPTKHQNLKLAAVIISVIVFLILMLALTIYLMRKRNRKSSFDTPRIEQLDKVSYQELYQGTDGFSDRNLIGSGSFGSVYKGNLASQDKVVAIKVLNLKKKGAHKSFIAECNALKNIRHRNLVKVLTCCSSTDYKGEEFKALVFDYMKNGSLEDWLHPRSSNSEHQRMLSLVQRLNIMIDIAYALHYLHRECEQIVLHCDIKPSNILLDDDMVARVSDFGITKLVSVVDDTSYKETSTVRLKGTIGYAPPEYGMSSEVSSYGDMYSFGILVLEMIIGRRPTDEMFEDGENLHTFVKNSFHGSIMQILDTNLVVPRDTEARVEKCLVSVLRIGIACSMESPKERMNIVDVTKELDIIKMVFLDGERRED 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04534 982 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 71 332 - -
Vifa3g04534 982 Gene3D Phosphorylase Kinase; domain 1 660 760 - -
Vifa3g04534 982 SUPERFAMILY L domain-like 32 325 - -
Vifa3g04534 982 SUPERFAMILY Protein kinase-like (PK-like) 653 969 IPR011009 -
Vifa3g04534 982 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 333 613 - -
Vifa3g04534 982 PANTHER LEUCINE RICH REPEAT KINASE 2 240 971 - -
Vifa3g04534 982 Gene3D Ribonuclease Inhibitor 33 146 IPR032675 -
Vifa3g04534 982 Gene3D Ribonuclease Inhibitor 147 217 IPR032675 -
Vifa3g04534 982 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 761 979 - -
Vifa3g04534 982 Gene3D Ribonuclease Inhibitor 220 610 IPR032675 -
Vifa3g04534 982 ProSitePatterns Protein kinases ATP-binding region signature. 685 708 IPR017441 GO:0005524
Vifa3g04534 982 Pfam Protein kinase domain 681 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04534 982 SMART LRR_typ_2 98 122 IPR003591 -
Vifa3g04534 982 SMART LRR_typ_2 489 513 IPR003591 -
Vifa3g04534 982 SMART LRR_typ_2 561 586 IPR003591 -
Vifa3g04534 982 SMART LRR_typ_2 194 218 IPR003591 -
Vifa3g04534 982 SMART LRR_typ_2 537 560 IPR003591 -
Vifa3g04534 982 SMART LRR_typ_2 393 416 IPR003591 -
Vifa3g04534 982 SUPERFAMILY L domain-like 341 600 - -
Vifa3g04534 982 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Vifa3g04534 982 ProSiteProfiles Protein kinase domain profile. 679 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04534 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672|GO:0006468
Vifa3g04534 982 FunFam LRR receptor-like serine/threonine-protein kinase EFR 650 760 - -
Vifa3g04534 982 SMART serkin_6 679 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04534 982 Pfam Leucine rich repeat 371 430 IPR001611 GO:0005515
Vifa3g04534 982 Pfam Leucine rich repeat 515 574 IPR001611 GO:0005515
Vifa3g04534 982 Gene3D Transferase(Phosphotransferase) domain 1 761 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04534 Vifa-Chr3 1299663052 1299666084 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04534 31 979 Receptor kinase-like Gene Family AT3G47570 43.509 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa3g04534 Pkinase 3.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04534 - - gmx:100778093 1138.64