Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04528 ATGGCTTATCACAACCAACATCTTTCACAAGAGATGCCAATCCACCATTTCACAGACCAATCTAACAACAACACTTTTCGTTCCATTTTACCAGACTCCCCCGACCCTAACTCCAAACATGATTCCGACCCAAACCAACTCCAAACCACACCTAATTGGCTCAACAACGCCATCCTTCGTACCCACTACACCGACAACAATAACGACCACAACAACAACAACGACGTTAACAACGACAACACCACCAACGATAACGGTAACGGAGCTTCTAATTTCCTTAACCTCCAAACCGCTTCCGACTCCGGCCAATGGCTTTCCCGCTCGATTCTCCACCGGCACCACGGTGAAGTCATCGACGATGTTACTGCTGTCGGCGACGTACACGATTTAGATGATCTGAAAGGCGATGTTGGAGGTGGTAAAGGAGACTGGCAGACGGGGAGATGGAAGGCGGAGATTATGTCGCACCCGTTGTATGAACAGTTGTTGTCGGCACATGTTGCGTGTTTGAGGATTGCGACGCCGGTGGACCAGTTGCCGAGGATTGATGCTCAGCTGGCACAGTCTCAGAATGTGGTCGAGAAATACTCCGCGTTCGGACAGAACATCGTCGGCGTAGAAGACAAAGAACTCGACCACTTCATGTCGCACTATGTTTTATTGCTGTGTTCCTTCAAAGAACAATTGCAACAACATGTCCGTGTCCATGCCATGGAAGCAGTAATGGCTTGTTGGGAGATAGAACAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGAGAAGGTACTGGAGCAACAATGTCTGACGACGAAGATGAACAAGTAGATAGTGAAGCAAATATGTTTGATGGTAGTTTTGATGGTGGCGGAGATAACATGGGATTTGGCCCTCTTATACCAACAGAGAACGAAAGGTCTCTAATGGAGCGCGTAAGGCAAGAGCTAAAGCATGAACTGAAACATGGTTACAAGGAGAAAATTGTCGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCCGGGAAACTTCCCGGTGACACAACCTCCGTCCTTAAGGCTTGGTGGCAATCACATTCTAAATGGCCTTATCCTACGGAGGAAGATAAGGCAAGGTTGGTGCAAGAAACTGGACTACAATTAAAGCAGATTAATAACTGGTTTATCAATCAAAGGAAGAGAAATTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGGTCTCAAAACTAG 1245 0.4659 MAYHNQHLSQEMPIHHFTDQSNNNTFRSILPDSPDPNSKHDSDPNQLQTTPNWLNNAILRTHYTDNNNDHNNNNDVNNDNTTNDNGNGASNFLNLQTASDSGQWLSRSILHRHHGEVIDDVTAVGDVHDLDDLKGDVGGGKGDWQTGRWKAEIMSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVEKYSAFGQNIVGVEDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSEANMFDGSFDGGGDNMGFGPLIPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSQN 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04528 414 MobiDBLite consensus disorder prediction 392 414 - -
Vifa3g04528 414 ProSiteProfiles ELK domain profile. 314 334 IPR005539 GO:0003677
Vifa3g04528 414 Gene3D - 335 396 - -
Vifa3g04528 414 MobiDBLite consensus disorder prediction 63 90 - -
Vifa3g04528 414 Pfam Homeobox KN domain 354 393 IPR008422 GO:0003677|GO:0006355
Vifa3g04528 414 MobiDBLite consensus disorder prediction 1 51 - -
Vifa3g04528 414 SMART KNOX1_2 147 191 IPR005540 GO:0003677|GO:0005634
Vifa3g04528 414 ProSiteProfiles 'Homeobox' domain profile. 334 397 IPR001356 GO:0003677
Vifa3g04528 414 Pfam ELK domain 314 335 IPR005539 GO:0003677
Vifa3g04528 414 MobiDBLite consensus disorder prediction 11 32 - -
Vifa3g04528 414 FunFam homeobox protein knotted-1-like 3 isoform X1 335 396 - -
Vifa3g04528 414 SUPERFAMILY Homeodomain-like 336 399 IPR009057 -
Vifa3g04528 414 CDD homeodomain 337 398 IPR001356 GO:0003677
Vifa3g04528 414 Pfam KNOX2 domain 207 255 IPR005541 GO:0003677|GO:0005634
Vifa3g04528 414 SMART ELK_2 314 335 IPR005539 GO:0003677
Vifa3g04528 414 Pfam KNOX1 domain 150 190 IPR005540 GO:0003677|GO:0005634
Vifa3g04528 414 SMART KNOX2_2 201 256 IPR005541 GO:0003677|GO:0005634
Vifa3g04528 414 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 133 399 - -
Vifa3g04528 414 SMART HOX_1 336 401 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04528 Vifa-Chr3 1297712675 1297715662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04528 1 411 Homeobox Transcription Factor Family AT5G25220 66.207 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vifa3g04528 KNOX2 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04528 - - pvu:PHAVU_009G090500g 607.446