Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04519 ATGATTCTCCCGTGGCGACCTTTTTCTCTCACACTTTCCATTCTTTTCTCAAAACCTCTCACCTTTCTTCCTCCCACCTTCAATCATTTTGTTGTTCCTCTACCTCTTGAGGGTCCACCTGGGCCCGCAGTTCAAGATCATCTACAGGATCATCTGCAGGAACATCGCATTACAGGAGTCAAGGGTATGGAAACATTTAGTGGAATAACTCAAGATTTCAGAGGAAGAGTTGAGTGTTACAAACATGATTGGATTTGTGCAATCAAAAGTGGCCTCAGAATATTGGCCCCAACTTTCTACATATTCTTTGCTTCTGCACTTCCTGTCATTGCTTTTGGAGAACAGCTCAATAGAGATACAGGTGGAAGCTTGAGCACAGTTGAAACATTGGCATCAACTGCTATTTGTGGAATTATCCACTCAATATTTGGTGGTCAACCTTTGTTAATTGTAGGAGTTGCTGAACCAACTTGTCTCATGTACACCTATCTATACAATTTTTGCGCAAAAACACCAGAGTTAGGTGCTCAGCTTTTCTTGGCTTGGGCTGCTTGGGTCTGTGTTTGGACAGCATTGTTGCTGATTCTACTGGCAATTTTCAATGCGTGTACGATTATAAGTAGGTTTACTAGGATTGCAGAAGAATTATTTGGCATGCTAATTACTGTGCTTTTCTTTCAACAGGCTGTAGAGGGACTCCTAACTGAGTTCAAGACACCAAAAGCTGCAGATCCCTTGTTAGAGGAATATCAATTTCATTGGCGGTATATAAATGGATTACTTTCGGTCATTTTCTTTTTCGGGTTAATTTTCACTGCCTTGTTAAGCAGAAAAGCAAGAAAATGGCGATACGGAACAGGGGGGATACGAGCCTTGGTTGCAGATTATGGTGTTCCAATGATGGTAGTGCTTTGGACTGTAATATCTTATGCTGTGCCAGGCAAAGTTCCACCTACTGTTCCTAGAAGGTTGTTTTGTCCACTTCCTTGGGATCCTGCATCTTTCTACCATTGGACAGTAATGAAGGATATGGTAAATGTACCATTGCTGTATATCTACGGAGCATTTATTCCGGCAATGATGATAGCAGGTTTATACTTTTTTGATCATAGTGTAGCTTCCAAGATGGCTCAACAGAAGGAGTTCAACCTTCAAAAACCATCTGCATACCACTATGATGTTTTTCTCCTTGGAATAATGACTTTGATTTGCGGTCTTCTCGGTCTTCCTCCATCAAATGGAGTCCTTCCTCAGTCTCCTATGCATACAAAGAGTTTAGCAATTCTTCGGAGGCAGATGATTCGAAAGAAGGTGGTGAAAGGTGCCAAGGAATGCATTAGGCACCAAGGGACGAACGCTGAATTATACGGAACGATGCGCTCCGTTTTCATAGAAATGGATGCAGTGCCTACGGCTAGAGAGTTGGAGAATTTGAAGGATGCTGTAATGAATACTAATCCTGCTACATCTCTTATCAAAAGGATACCTACCTCAGTTCTTTGGGGATATTTTGCTTACATGGCAATTGATAGTCTTCCAGGGAATCAATTTTTTGAGAGAATTTTGCTTCTTTTCATCACCCCGAAAAGGCAGTACAAAGTTTTGGAAGGCACTCATTCGTCGTTTGTGGAGACAGTACCATTCAAGACAATAGCTGGATTTACAGCTTTACAGCTTCTATACTTTTTTCTGTGCTATGGTTTAACATGGATACCTATTGGTGGAATATTGTTTCCAGTACCTTTCTTCCTTCTCATAATGCTAAGAGAGAAACTGCTTCCAAGATTATTCAAGGCAAGCCATCTTCAGGAGTTAGATGCTTCTGAGTATGAGGAAATTGTCGGAGCTCCGCTTGGACCCTACAATATACCACTGATTGATAAAGATGCGCTTACTAGTGCTAACAGTGATAGCGAAGAAGAAAATGATTATGATGCGGAGATTTTGGATGAGATGACAACTCATAGAGGAGAGTTGAAATTTAGAACAATAAACCAAAATGATAACAGAAACTTCAACCGTAGCTTCAACCGTAGCTTCACTTCTCGCTTCAACGAAGACAGAAACTCTCAGGCTTACCCTGACGAAACTAGCCGTATATGA 2103 0.4123 MILPWRPFSLTLSILFSKPLTFLPPTFNHFVVPLPLEGPPGPAVQDHLQDHLQEHRITGVKGMETFSGITQDFRGRVECYKHDWICAIKSGLRILAPTFYIFFASALPVIAFGEQLNRDTGGSLSTVETLASTAICGIIHSIFGGQPLLIVGVAEPTCLMYTYLYNFCAKTPELGAQLFLAWAAWVCVWTALLLILLAIFNACTIISRFTRIAEELFGMLITVLFFQQAVEGLLTEFKTPKAADPLLEEYQFHWRYINGLLSVIFFFGLIFTALLSRKARKWRYGTGGIRALVADYGVPMMVVLWTVISYAVPGKVPPTVPRRLFCPLPWDPASFYHWTVMKDMVNVPLLYIYGAFIPAMMIAGLYFFDHSVASKMAQQKEFNLQKPSAYHYDVFLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAILRRQMIRKKVVKGAKECIRHQGTNAELYGTMRSVFIEMDAVPTARELENLKDAVMNTNPATSLIKRIPTSVLWGYFAYMAIDSLPGNQFFERILLLFITPKRQYKVLEGTHSSFVETVPFKTIAGFTALQLLYFFLCYGLTWIPIGGILFPVPFFLLIMLREKLLPRLFKASHLQELDASEYEEIVGAPLGPYNIPLIDKDALTSANSDSEEENDYDAEILDEMTTHRGELKFRTINQNDNRNFNRSFNRSFTSRFNEDRNSQAYPDETSRI 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04519 700 FunFam probable boron transporter 2 76 118 - -
Vifa3g04519 700 Pfam HCO3- transporter family 259 432 IPR011531 GO:0006820|GO:0016020
Vifa3g04519 700 Pfam HCO3- transporter family 65 239 IPR011531 GO:0006820|GO:0016020
Vifa3g04519 700 Pfam HCO3- transporter family 489 556 IPR011531 GO:0006820|GO:0016020
Vifa3g04519 700 PANTHER ANION EXCHANGE PROTEIN 61 614 IPR003020 GO:0005452|GO:0006820|GO:0016020
Vifa3g04519 700 Gene3D Helical hairpin bin 76 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04519 Vifa-Chr3 1294442729 1294446665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04519 66 665 Antiporters AT5G25430 61.515 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04519 K24194 - gmx:100787412 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04519 3 1294442729 1294446665 Vifa3g04519 3 1294442729 1294446665 ECH
Vifa2g04054 2 1188589727 1188591310 Vifa3g04519 3 1294442729 1294446665 ECH
Vifa3g04519 3 1294442729 1294446665 Vifa2g04054 2 1188589727 1188591310 PCT