Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04511 ATGGAGAGCAATGAAGTATCAAGAGTTGAAAGTTTAAGAAGAGTTAGTAGTTCTTCCCTGTGGAGGAACAATAGTATGGATATTTTCTCAACATCTGAACGTGAAGATGATGAAGAAGCACTTAAATGGGCTGCTATAGAGAGATTACCAACCTATTTAAGGATCAGAAGAAGCATAATCAATGATGAAGAAGGTGAAGGGAGAGAGATTGATATCAAGAAGCTTGGATTCACTGAGAGAAAGGTTTTGCTAGAGAGACTTGTGAAGATTGCTGAAGAAGATAATGAAAAGTTCTTGTTGAAACTCAAGGAAAGAATGGATAGAGTTGGAATTGATATTCCAACAGTTGAAGTGAGATTTGAGCATGTGAATGTTGAAGCGCAGGTTTATGTTGGAGGAAGAGCTTTACCTTCATTGTTTAACTTCTTTGTTAATGGCTTAGAGGGATTTTTGAATTATCTTCATGTTATTCCTAGTCCAAAGAAATCATTGCATATTCTTCAAAATGTTAGTGGAATCATAAAGCCTCAAAGAATGACATTACTTTTGGGGCCACCAGGCTCTGGAAAAACCACTTTGCTTTTGGCTTTGGCTGGAAAACTTGATAAAGAATTGAAAAATTATGGGAGAGTAACATACAATGGGAAAGGACTAGAAGAGTTTGTGCCACAAAGAACATCAGCTTATATAAGTCAACATGATAATCACATTGGAGAAATGACTGTTAGAGAAACCCTAGCTTTCTCTGCAAGGTGTCAAGGGGTTGGACATAATTATGATATGTTGACTGAACTACTAAGAAGAGAGAAAGAAGCAAAGATTAAACCGGATCCTGATATCGATGCCTATATGAAGGCAGCAGCACTAGAAGGACAGCAGGCGAGTGTGGTAACCGACTATATTCTCAAGATTTTGGGACTTGAAATATGCGCCGACATTATGGTAGGAGATGGAATGATAAGAGGTATATCAGGAGGACAGAAAAAGAGAGTCACAACAGGTGAGATGCTGGTTGGACCTATAAGAGTGTTGTTTATGGATGAGATATCGACTGGTTTGGACAGTTCAACGACTTTTCAAATAATCAGCTCGATCAGACAATCGATCCATATTCTGAAGGGAACTGCACTTGTGTCACTTCTACAGCCAGCACCGGAAACTTATGAATTATTTGATGATATCATACTTCTCACAGATGGACAAATTGTTTATCAAGGACCGAGAGAGAATGTACTTGAGTTCTTCGAATCAATGGGATTCAAGTGTCCCGAGAGAAAAGGCATCGCAGATTTCTTACAAGAAGTGACATCGAGAAAAGATCAATGGCAATATTGGGCGAATAAAGACGAACCGTATAGTTTTGTTACTGTCAAGGATTTTGCCGAAGCCTTTCAGATATTTCACATAGGCCAAAAACTTGGAGACGAACTAGCTAATCCTTTTGACAAATCTAAATGCCATGCAAATATCTTGACTACAAAGAAATATGGTGTTAACATGAAGGAGCTGTTAAAGGCTTGTGCTAGTAGAGAGTTTTTGCTTATGAAGCGAAATTCATTTGTCCATATATTCAAAGTCACTCAACTTATTTATTTAGCAATCATGACAACAACGTTGTTTCTAAAAACTAAGATGCATAAAGATACCGTCGAAGATGGAGGAACATACATGGGAGCACTATTCTTTACAGTGCTAGTAGCGATGTTCAACGGAATATCAGAGCTAAATATGACTATCATGAAACTTCCTGTCTTTTACAAGCAAAGAGATCTTCTTTTCTATCCTTCATGGGCTTATTCACTTCCACCATGGATTCTCAAAATACCAATAACTCTAGTAGAAGTTGCTATTTGGGAAGCCATCACTTACTATGCCGTTGGCTACGATCCAAGTTTTCTAAGGCTTTTAAGACAGTACTTGATATTACTATGCATTAACCAGATGGCATCTTCACTATTTCGGTTAATGGCTGCATTAGGAAGGAATGTTATAGTTGCAAACACTGTCGGGTCATTTGCATTACTAGTAGTTATGGTTTTGGGAGGATTTGTGATTTCAAGAGAGGATGTGCACAAATGGTTTCTTTGGGGTTACTGGTCCTCACCACTGATGTATGGACAGAATGCTATAGCTGTGAATGAATTTCTTGGACATAGTTGGAGAAAGATTACTCAAAATTCCAATGAAACATTGGGAGTTTTGACAATGAAAACTCGCGGTTTTTTCCCACAAGCTTACTGGTATTGGATTGGTGTAGGAGCATTGATTGGTTATGTTTTTCTGTTTAACTTTCTGTTCACCTTGGCTTTAAAATATCTCAGCCCATTCAGAAAGGATCAAGCAGGACTATCCGAGGAGGAGTTGCTAGAGAGAGATGCTTCATCAATAGCTGAAGACTTTACACATTTACCAACTCGAAAGAGAATTTCTGAAACAAAGATGGCAGAAGAAGAACTTATGCCGTCCGCGTCTTTTTCTGCAAGAGTTGATAATGGTATAGCTAGTAGAAGTGGAAGGAGAGGCATGGTTCTTCCTTTTCAACCTCTATCCCTCACTTTTGATGAGATCAGATATGCTGTAGACATGCCACAGGAAATGAAAAGTCAAGGAGTTTTCGAGGATCGTCTCGAACTTTTGAAAGGTATCACAGGTGCCTTTAGGCCTGGAGTACTAACAGCTTTGATGGGAGTGAGTGGTGCTGGAAAGACTACTCTAATGGATGTTTTAGCCGGAAGGAAAACCGGTGGATATATTGAAGGAAACATCACAATATCTGGATATCCAAAGAATCAAAAAACATTTGCTCGCATATCAGGATATTGCGAACAATTTGATATCCACTCACCTAATGTTACAGTTTATGAATCTTTGCTATATTCGGCATGGCTTCGGTTACCACCTGAAGTTGATCAAGCTACTAGAAAGATGTTTATTGAAGAAGTTATGGAGCTTGTAGAGCTTAACTCATTAAGAGAAGCACTAGTTGGATTGCCAGGCGAGAATGGACTTTCAACCGAACAACGCAAAAGACTTACAATTGCGGTTGAACTTGTAGCCAATCCATCGATAATATTCATGGACGAACCAACCTCTGGCCTTGATGCTAGAGCAGCTGCAATTGTAATGAGAACAGTGAGGAACACCGTGAACACAGGACGTACCGTAGTTTGCACGATACATCAGCCAAGTATCGACATTTTCGACGCCTTTGATGAGCTTCTACTTATGAAATTGGGAGGTGAGCAAATATATGCCGGTCCATTAGGCCGCCAGTGTTCTCAATTGATTCAATACTTCGAGGCTATTCAAGGAGTTCCTAAGATCAAAGATGGTTATAATCCTGCAACATGGATGTTGGAAGTTACATCAGCAGGATCAGAAGCAAATCTTAAGGTCAACTTCACTAATGTATACAGAAACTCGGAACTTTACCGGAGAAACAAACAGTTGATCCAGGAATTAAGTATACCTCCTCAAGGTTCAAAGGATTTATACTTCAATAGTCAATACACGCAAAGTATGCTGTCACAATGTAAAGCTTGTCTATGGAAACAACATTTATCGTATTGGCGAAACACGTCGTATACAGCAGTTAGACTGTTGTTTACAACACTAATAGCATTCTTGTTTGGAATCATATTTTGGAACATTGGCTTGAAAAGGAGAAAGGAGCAAGATCTTTTCAATGCAATGGGATCAATGTATTCTTCTGTTATATTTATTGGAGTACAAAATGGTTCCTCAGTTCAGCCTGTAATAGCAGTTGAGAGAACAGTCTTTTATAGAGAAAGAGCTGCTGGAATGTATTCTGCTTTGCCTTATGCTCTAGCACAGGTTATAATAGAGCTTCCCCACATCTTGGTTCAGACCCTGATATATGGGATCATTGTATATTCTATGATGGGATTTGAGTGGACAGCATCAAAATTCTTGTGGTATATTTTCTTCAATTACTTCACTTTCTTGTACTACACCTTCTATGGTATGATGACCATGGCCATCAGTCCCAACCAACATGTTGCTGCCATAATGTCCACTTCATTCTATGCAATATGGAACCTTTTCTCTGGCTTTATCGTTCCCTTATCTAGAATACCAATATGGTGGAAGTGGTACTATTGGGTTTGTCCAGTTGCATGGACCTTGTATGGATTGTTGGGTTCTCAATATGGAGACAACATGGAGACACTTGAGAATGGTCAAAGAGTTGAAGAATTTGTGAGAAATTACTTTGGTTTTGAACATGATTTTCTAGGAGTGGTTGCAATTGTCGTGGCTGGTTTTTCAGTGTTGTTTGCACTTATCTTCACCTTTGGTATCAAAGCATTCAATTTTCAGAAAAGATGA 4347 0.3888 MESNEVSRVESLRRVSSSSLWRNNSMDIFSTSEREDDEEALKWAAIERLPTYLRIRRSIINDEEGEGREIDIKKLGFTERKVLLERLVKIAEEDNEKFLLKLKERMDRVGIDIPTVEVRFEHVNVEAQVYVGGRALPSLFNFFVNGLEGFLNYLHVIPSPKKSLHILQNVSGIIKPQRMTLLLGPPGSGKTTLLLALAGKLDKELKNYGRVTYNGKGLEEFVPQRTSAYISQHDNHIGEMTVRETLAFSARCQGVGHNYDMLTELLRREKEAKIKPDPDIDAYMKAAALEGQQASVVTDYILKILGLEICADIMVGDGMIRGISGGQKKRVTTGEMLVGPIRVLFMDEISTGLDSSTTFQIISSIRQSIHILKGTALVSLLQPAPETYELFDDIILLTDGQIVYQGPRENVLEFFESMGFKCPERKGIADFLQEVTSRKDQWQYWANKDEPYSFVTVKDFAEAFQIFHIGQKLGDELANPFDKSKCHANILTTKKYGVNMKELLKACASREFLLMKRNSFVHIFKVTQLIYLAIMTTTLFLKTKMHKDTVEDGGTYMGALFFTVLVAMFNGISELNMTIMKLPVFYKQRDLLFYPSWAYSLPPWILKIPITLVEVAIWEAITYYAVGYDPSFLRLLRQYLILLCINQMASSLFRLMAALGRNVIVANTVGSFALLVVMVLGGFVISREDVHKWFLWGYWSSPLMYGQNAIAVNEFLGHSWRKITQNSNETLGVLTMKTRGFFPQAYWYWIGVGALIGYVFLFNFLFTLALKYLSPFRKDQAGLSEEELLERDASSIAEDFTHLPTRKRISETKMAEEELMPSASFSARVDNGIASRSGRRGMVLPFQPLSLTFDEIRYAVDMPQEMKSQGVFEDRLELLKGITGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKNQKTFARISGYCEQFDIHSPNVTVYESLLYSAWLRLPPEVDQATRKMFIEEVMELVELNSLREALVGLPGENGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFDAFDELLLMKLGGEQIYAGPLGRQCSQLIQYFEAIQGVPKIKDGYNPATWMLEVTSAGSEANLKVNFTNVYRNSELYRRNKQLIQELSIPPQGSKDLYFNSQYTQSMLSQCKACLWKQHLSYWRNTSYTAVRLLFTTLIAFLFGIIFWNIGLKRRKEQDLFNAMGSMYSSVIFIGVQNGSSVQPVIAVERTVFYRERAAGMYSALPYALAQVIIELPHILVQTLIYGIIVYSMMGFEWTASKFLWYIFFNYFTFLYYTFYGMMTMAISPNQHVAAIMSTSFYAIWNLFSGFIVPLSRIPIWWKWYYWVCPVAWTLYGLLGSQYGDNMETLENGQRVEEFVRNYFGFEHDFLGVVAIVVAGFSVLFALIFTFGIKAFNFQKR 1448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04511 1448 CDD ABCG_PDR_domain1 149 406 IPR034001 -
Vifa3g04511 1448 Pfam ABC-2 type transporter 382 433 IPR043926 GO:0140359
Vifa3g04511 1448 Pfam ABC-2 type transporter 1177 1390 IPR013525 GO:0016020|GO:0140359
Vifa3g04511 1448 Pfam ABC-2 type transporter 503 715 IPR013525 GO:0016020|GO:0140359
Vifa3g04511 1448 CDD ABCG_PDR_domain2 848 1086 IPR034003 -
Vifa3g04511 1448 Gene3D - 867 1100 IPR027417 -
Vifa3g04511 1448 Pfam ABC transporter 879 1031 IPR003439 GO:0005524
Vifa3g04511 1448 FunFam ABC transporter G family member 40 865 1095 - -
Vifa3g04511 1448 Gene3D - 154 458 IPR027417 -
Vifa3g04511 1448 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 424 IPR003439 GO:0005524
Vifa3g04511 1448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 874 1087 IPR027417 -
Vifa3g04511 1448 Pfam Plant PDR ABC transporter associated 720 781 IPR013581 -
Vifa3g04511 1448 Pfam ABC-transporter N-terminal 74 142 IPR029481 -
Vifa3g04511 1448 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 851 1103 IPR003439 GO:0005524
Vifa3g04511 1448 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 7 1448 - -
Vifa3g04511 1448 Pfam ABC transporter 167 349 IPR003439 GO:0005524
Vifa3g04511 1448 FunFam ABC transporter G family member 34 154 458 - -
Vifa3g04511 1448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 424 IPR027417 -
Vifa3g04511 1448 SMART AAA_5 888 1080 IPR003593 GO:0016887
Vifa3g04511 1448 SMART AAA_5 176 401 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04511 Vifa-Chr3 1291964943 1291972002 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04511 889 1063 Calmodulin-binding Proteins AT2G36910 26.630 1.47e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04511 K08711 - gmx:100810505 2504.55