Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04509 ATGGAGAGCAATGGCACTAAAACATGGTGGAACTATTGCATGAATGTTTTCTCAAAATCTAAACGTGAAGATGGTGATGATGAAGAAGCTCTAAAGTGTGTTGCAATAGATAGAATCCTTTCAAGTGCGTGCTTTATGAGAAATGAAGAGACCAAAGAAGAAGGAAAACATGTTGACAGCACCATGAAACTTGAGTTGACAGAAAAAAGAGCTTTGTTAGAGAGACTTGTGAAGATTGCTGAAGAAGATAATGAAAAGTTTTTGTTGAAACTCAAGGAAAGAATGGACAGAGTTGGACTTGAACTTCCAACAATTGAAGTTAGATTTGAGGATATAAATGTGGAAGCACAAGTTTATGTTGGAAGTAGAGCATTACCTACATTGCTTAACTTCTTTGTGAATGTGCTAGAGGGGTGCTTAAATAATCTTCATATAATTCCAAGTCCAAAAAAACAGTTACATATTCTTCAGAATGTTAGTGGAATCATAAAGCCTAGAAGGATGACATTGCTTTTAGGGCCACCTGGTTCTGGAAAGACCACTTTGCTTTTGGCATTGGCTGGAAGACTTGAAAAAGATTTGAAGAAATCTGGGAGAGTAACATACAATGGAAAAGGACTAGAAGAGTTTGTTCCACAAAGAACATCGGCTTATGTAAGTCAATACGATAATCACATCGGAGAAATGACTGTTAGAGAAACTTTAGCTTTCTCAGCAAGGTGTCAAGGGGTTGGACACAATTATGAAATGTTGACCGAACTATTGAGAAGAGAGAAGGAATCGAAGATTGAACCGGATTCTGATATTGATGCCTATATGCAGGAAGCAGCAATAGAAGGCCACCAGAATAGTGTAGTCATTGATTACATTCTTAAGATTTTAGGACTTGAAGCTTGTGCTAACATAATGGTGGGAGACCAAATGATAAGAGGTATCTCAGGAGGTGAGAAAAAGCGACTTACTACAGGTGAGATGCTGGTTGGTCCTATAAAGGTTTTGTTTATGGATGAGATATCAAATGGTTTGGACAGTTCAACAACTTTTCAGATAATCAGCTCAATCAAGCAAACCGTTCAAATTCTAAATGGAACTGCACTTGTTTCTCTTCTACAGCCAGCGCCTGAAACTTATGAACTATTTGACGATATCATACTTCTCACAGATGGACAAATTGTTTACCAAGGACCAAGAGAAAACGTACTCGAGTTTTTTGAATCAATCGGCTTCAAGTGTCCTGAAAGAAAAGGCGTCGCTGATTTCTTACAAGAAGCAACTTCAAGAAAAGACCAATGGCAATATTGGGCGCGTAAAGATGAACCTTACAACTTTGTCACTGTCAAGGATTTCGCTCGAGCCTTCGAGTTATTTCACGTCGGTCAACAACTTGAAGAAGAGCTAGCCGATCCATTTGACAAGGCGAAGTTTCATTCAAATGTCTTGATCACAAAGAAATACGGTATTAACAAGAAGGAGCTTCTAAAGGCTTGTGCTAGCAGAGAATTTTTGCTTATGAAGCGGAATTCGTTTGTCTACATATTCAAAGCGACCCAACTTACTTATTTAGCTACCTTGACGACGACGTTATTTCTACGAATCAAGATGAGGCACTCTACCGTTGAGGATGCAGAAACTTACATGGGAGCACTATTCTTCACAGTGACAGTAGCAATGTTCAACGGAATATCAGAGCTAAATATGACTATCATGAAGCTTCCGATCTTTTACAAGCAAAGAGATCTTCTTTTCTATCCTTCTTGGGCTTATTCACTTCCACCATGGATCCTCAAAATACCGATAACTCTCATAGAAGTTGCCATATGGGAATGCATATCTTACTATGCCATTGGCTATGATCCAAATATCGGAAGGTTTTTTAAGCAGTACTTGGTAATCCTATGCATTAATCAGATGGCATCTGCGCTATTTCGGTTTATGGCTGCATTAGGAAGGGATATTGTAGTGGGAAACACATTTGGAACATTTTCACTACTCGCAGTTACTGTTTTAGGAGGATTTGTTATTTCAAGAGAGGATGTGCACAAATGGTTTCTTTGGGGTTATTGGTCGTCGCCATTAATGTATGGACAAAATGCTATAGCTGTGAATGAATTTCTTGGACATAGTTGGAGAAAGGTTGTTCCTAATTCCAATGAAACATTAGGAGTATTGATACTAAAATCTCGCGGATTTTTCCCACAAGCTTATTGGTATTGGATTGGAATTGGAGCTTTGGTTGGTTATGTTTTTCTATTTAACTTTCTCTTCGCCTTGGCTTTGCACTATCTCAGTCCATTCAGAAAGGATCAAGCAGGTTTGTCCCAAGAGAAACTGCAAGAGAGAAATGCTTCAACAGATGATTTTGATGATAAATCAGATACAAAGACGGACGAAGCAGTTGGCGAAAACAAAGCTAGCAGTAGAGGAAGAAAAGGAATGGTTCTTCCTTTTGAGCCTCTATCCCTCACTTTTGATGATATCAGATATTCTGTTGACATGCCACAGGAAATGAAAAATCAAGGAGTTTGCGAGGATCGTCTCGGACTTTTAAAGGGTATCAGTGGTGCATTTAGGCCTGGAGTACTAACAGCTTTGATGGGTGTAAGTGGTGCTGGAAAGACTACTCTAATGGATGTTTTAGCCGGAAGAAAAACTAGAGGATATATTGAAGGAAGCATCACAATCTCTGGCTATCCAAAGAACCAAAAGACGTTCGCTCGCGTAGCTGGATATTGCGAACAATTCGATATCCATTCACCTAATGTTACAGTTTATGAATCATTGCTATATTCTGCATGGCTTCGTTTATCGCCTGAAGTTGATCATGCAACTAGAAAGATGTTTATTGAGGAAGTTATGGAGCTAGTAGAACTTAACTCATTAAGAGAAGCACTTGTTGGATTTCCAGGAGAGAATGGACTTTCAACCGAACAACGTAAGAGGCTTACAATTGCAGTTGAACTCGTAGCGAATCCATCAATAATATTCATGGATGAACCAACCTCTGGCCTTGATGCTAGAGCAGCTGCTATAGTAATGAGAACAGTAAGGAACACTGTGGACACAGGACGTACCGTAGTTTGCACGATCCATCAGCCAAGTATCGACATTTTTGACGCCTTTGATGAGCTTCTACTTCTGAAATCGGGAGGTGAGCAGATATATGCTGGTCCAATAGGCGACCAATGTTCCGATCTGATCGATTACTTCGAGGCTATTCATGGAGTTCCTAAAATCAAAGATGGTTATAATCCTGCAACATGGATTTTAGAAGTTACATCAACAGGAAAAGAGACAAACCTTAAGGTCAATTTCACTGATGTGTACAATAACTCAGAACTAAACAGGAGAAATAAACAGTTGATTCAGGAGCTTAGTGCTCCTTCTCAAGATTCAAAAGATCTACACTTTGATGCTCAATATTCGCAAACTCTTATCGCACAATGTACAGCTTGTCTATGGAAACAACATTTATCATATTGGCGGAACACATCGTATACAGCTGTTAGACTCCTATTTACTATCATGACAGGTTTATTGTTTGGCCTAATTTTTTGGGATGTAGGCTTGAAAAGGAAAAAGGAGCAAGATCTATTCAATGCAATGGGATCAATGTATGCTGCTGTTACCTTCATAGGGGTTGTAAATGGTGCCTCCGTGCAACCAATAGTAGCAATTGAGAGAACAGTTTTCTATCGAGAAAGAGCTGCAGGAATGTATTCGGCATTGCCATATGCTCTCGCACAGGTTATTATAGAGATTCCCCACATCTTGGTTCAGGCTCTTGTATATGGGATCATAGTATATGCCATGATGGGATTTGAGTGGACAACATCAAAAGTTTTGTGGAATCTCTTCTTCACATACTTTAGTTTCTTATACTATACCTACTATGGTATGATGACAATGGCCATAACTCCAAACCCGCATGTTGCTGGCATATTGTCCACTTCATTCTATGCAATATGGTGCCTTTTCTCAGGCTTCATCATTCCCTTATCTAGAATACCGATATGGTGGAAGTGGTACTATTGGATGTGTCCAGTTGCATGGACCTTATATGGATTGGTGGCTTCTCAATATGGAGACAACATGGATACACTTGAGAATGGTCAAAGGGTTGAAGAATTTATTAGGATTTACTTTGGTTTTGAACATGACTATCTAGGAATGGTTGCAATTGTTGTGGCTAGTTTCTCAGTGTTGTTTGCAATCATCTTCATTTTTGGTATCAAAGCATTCAACTTCCAAAAAAGATGA 4257 0.3916 MESNGTKTWWNYCMNVFSKSKREDGDDEEALKCVAIDRILSSACFMRNEETKEEGKHVDSTMKLELTEKRALLERLVKIAEEDNEKFLLKLKERMDRVGLELPTIEVRFEDINVEAQVYVGSRALPTLLNFFVNVLEGCLNNLHIIPSPKKQLHILQNVSGIIKPRRMTLLLGPPGSGKTTLLLALAGRLEKDLKKSGRVTYNGKGLEEFVPQRTSAYVSQYDNHIGEMTVRETLAFSARCQGVGHNYEMLTELLRREKESKIEPDSDIDAYMQEAAIEGHQNSVVIDYILKILGLEACANIMVGDQMIRGISGGEKKRLTTGEMLVGPIKVLFMDEISNGLDSSTTFQIISSIKQTVQILNGTALVSLLQPAPETYELFDDIILLTDGQIVYQGPRENVLEFFESIGFKCPERKGVADFLQEATSRKDQWQYWARKDEPYNFVTVKDFARAFELFHVGQQLEEELADPFDKAKFHSNVLITKKYGINKKELLKACASREFLLMKRNSFVYIFKATQLTYLATLTTTLFLRIKMRHSTVEDAETYMGALFFTVTVAMFNGISELNMTIMKLPIFYKQRDLLFYPSWAYSLPPWILKIPITLIEVAIWECISYYAIGYDPNIGRFFKQYLVILCINQMASALFRFMAALGRDIVVGNTFGTFSLLAVTVLGGFVISREDVHKWFLWGYWSSPLMYGQNAIAVNEFLGHSWRKVVPNSNETLGVLILKSRGFFPQAYWYWIGIGALVGYVFLFNFLFALALHYLSPFRKDQAGLSQEKLQERNASTDDFDDKSDTKTDEAVGENKASSRGRKGMVLPFEPLSLTFDDIRYSVDMPQEMKNQGVCEDRLGLLKGISGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTRGYIEGSITISGYPKNQKTFARVAGYCEQFDIHSPNVTVYESLLYSAWLRLSPEVDHATRKMFIEEVMELVELNSLREALVGFPGENGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKSGGEQIYAGPIGDQCSDLIDYFEAIHGVPKIKDGYNPATWILEVTSTGKETNLKVNFTDVYNNSELNRRNKQLIQELSAPSQDSKDLHFDAQYSQTLIAQCTACLWKQHLSYWRNTSYTAVRLLFTIMTGLLFGLIFWDVGLKRKKEQDLFNAMGSMYAAVTFIGVVNGASVQPIVAIERTVFYRERAAGMYSALPYALAQVIIEIPHILVQALVYGIIVYAMMGFEWTTSKVLWNLFFTYFSFLYYTYYGMMTMAITPNPHVAGILSTSFYAIWCLFSGFIIPLSRIPIWWKWYYWMCPVAWTLYGLVASQYGDNMDTLENGQRVEEFIRIYFGFEHDYLGMVAIVVASFSVLFAIIFIFGIKAFNFQKR 1418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04509 1418 FunFam ABC transporter G family member 40 835 1065 - -
Vifa3g04509 1418 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 821 1073 IPR003439 GO:0005524
Vifa3g04509 1418 Pfam Plant PDR ABC transporter associated 709 770 IPR013581 -
Vifa3g04509 1418 Pfam ABC-2 type transporter 1147 1360 IPR013525 GO:0016020|GO:0140359
Vifa3g04509 1418 Pfam ABC-2 type transporter 492 704 IPR013525 GO:0016020|GO:0140359
Vifa3g04509 1418 MobiDBLite consensus disorder prediction 779 804 - -
Vifa3g04509 1418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 841 1061 IPR027417 -
Vifa3g04509 1418 Pfam ABC transporter 156 339 IPR003439 GO:0005524
Vifa3g04509 1418 Gene3D - 835 1066 IPR027417 -
Vifa3g04509 1418 Pfam ABC transporter 849 1001 IPR003439 GO:0005524
Vifa3g04509 1418 Pfam ABC-transporter N-terminal 62 131 IPR029481 -
Vifa3g04509 1418 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 4 1418 - -
Vifa3g04509 1418 CDD ABCG_PDR_domain2 818 1056 IPR034003 -
Vifa3g04509 1418 SMART AAA_5 858 1050 IPR003593 GO:0016887
Vifa3g04509 1418 SMART AAA_5 165 390 IPR003593 GO:0016887
Vifa3g04509 1418 Coils Coil 63 83 - -
Vifa3g04509 1418 Pfam ABC-2 type transporter 371 420 IPR043926 GO:0140359
Vifa3g04509 1418 MobiDBLite consensus disorder prediction 777 806 - -
Vifa3g04509 1418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 413 IPR027417 -
Vifa3g04509 1418 Gene3D - 140 448 IPR027417 -
Vifa3g04509 1418 FunFam ABC transporter G family member 34 143 447 - -
Vifa3g04509 1418 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 140 413 IPR003439 GO:0005524
Vifa3g04509 1418 CDD ABCG_PDR_domain1 140 395 IPR034001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04509 Vifa-Chr3 1291197505 1291204120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04509 848 1033 Calmodulin-binding Proteins AT2G36910 26.020 7.69e-06 48.9