Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04505 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATCCATGATTATCTTGTGAAGAGGGATTTGAAAGTTTCAGCTCAGGCTTTTCAGGCTGAAGGGAAAGTGTCATCTGATCCTGTTGCTATTGATGCCCCGGGAGGATTTTTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCTAGGACGAATGAGAAGCATTCGGAAGTTGCGGCGTCTTATATTGAGACTCAGTTAATTAAGGCGAGGGAGCAGCAACAACAGCAACAGCAGCAGCAGCCACAACCTCAGCAGTCACAACATCAACAACAGCAGAATCAACAACAACAGCAGATGCAGATGCAACAGATGCTGTTACAGAGGCAGCAGCAGCAACAACAGCAACAGCAGCAGCAACAACAGCACCAGCAACAACAGCAGCAACCACAGCATCAACAACAGCAGCAGCAGCAGCAGCAACAGGGTAGGGATAGGGCTCATCTCTTGAATGGTGGTGGTGCAAATGGATTGGTTGGAAACCCTAGCACTGCAAATGCAATTGCAACGAAGATGTATGAGGAAAGGTTAAAACTCCCCCTTCAAAGAGATTCTTTGGAAGATGCTGCAATGAAGCAAAGATTTGGAGACCAAATATTGGACCCAAATCATGCCTCAATTTTGAAGTCATCTGCTGCTACTGGCCAACCGTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAATTCAAGGTCGTAATCAGCAACTACCAGGGTCTACTCCGGATATAAAAACTGAGATTAATCCTTTAAACCCTAGAGCTCCGGGTCCTGAATCGTTGATGGCAATTCCTGGATCAAATCAAGGTGGCAACAATTTGACTCTGAAAGGGTGGCCACTCACAGGGTTGGAGCAACTTCGTTCTGGTTTACTCCAGCATCAAAAACCTTTCATACAGAATCCACAGCCTTTTCATCAACTTCCAATGTTGACACAACATCAGCAACAGCTTATGTTAGCACAGCAAAACCTGGCGTCACCATCCGCCAGTGATGAAAGTAGAAGACTCAGAATGCTACTGAACAATAGAAATATGGGCGTAGGTAAGGATGGCCTTTCAAATCCTGTTGGTGATGTCGTATCGAATGTTGGATCACCCCTTCAAGCAGGTGGTCCTCCTTTTCCTCGTGCTGATACGGATATGCTAATGAAGATGAAACTGGCTCAGTTACAACACCAACAACAGCAGAATGCGAACCCACAGCAGCAGCAACTTCAACAGCATTCTCTTTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACCGGAGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAACCAGACTGGAAGAAAGAGAAAGCAACCTGTTTCCTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCTAATACAGCAGGCCCATCTCCGAGTTCAGCACCCTCAACTCCGTCAGGCTCAACTCATACCCCTGGTGATGTGATATCAATGCCTTCTTTACCTCATAACGGTAGCTCTTCTAAGCCATTGATGATGTTTGGCACTGATGGCACCGGAACTCTTACCTCACCTTCAAACCAATTGGCAGATGTGGACCGCTTTGTTGAGGATGCATCTCTTGATGATAACGTTGAGTCTTTTTTATCTCATGATGATAATGACCCTAGAGATCCAGTTGGACGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAATTCTGTCCGTGCAAGCACAAGCAAAGTTGTTTGTACTCATTTCTCATCCGACGGCAAATTGCTCGCAAGTGGCGGCCATGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAGCTACTATTGAAGAGCATTCATTTTTAATTACCGATGTCCGTTTCAGTCCAACCCTGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCCGCGTTTGGGATGTTGACAATCCTGGGTATTCGCTTCGTACTTTCACTGGGCATTCTGCATCAGTTATGTCACTAGACTTTCACCCTAATAAAGAGGACCTTATCTGTTCTTGTGACTACGATGGCGAGATAAGATATTGGAGTATTAATAATGGCAGTTGTGCTAGAGTAGCGAAGGGTGGCACTGCACAAATGAGATTTCAACCTAGGCTAGGGAGATACCTTGCTGCAGCTGCAGAGAACGTTGTCTCTATACTTGATGTCGAGACACAAGCATGCCGATATTCACTGAAGGGTCACACAAAGTCGATACATTCTGTGTGTTGGGATTCATCTGGGGAGTACTTGGCATCTGTCAGCGAGGACTCTGTCAGAGTTTGGACTCTCGGAACTGGAAGTGAAGGGGAATGTGTTCACGAGCTTAGCTGTAACGGCAATAAGTTTCACTCATGCGTCTTCCATCCAACGTACTCGTCACTGCTGGTCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGACAGAGAACAAGACGATGACTCTGTCAGCTCACGACGGTCTTATTGCTGCTCTGGCCGTGTCCACCGTAAACGGTTTGGTTGCTTCAGCTAGTCATGACAAGTTTGTCAAGCTCTGGAAGTGA 2661 0.4573 MSQTNWEADKMLDVYIHDYLVKRDLKVSAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQPQPQQSQHQQQQNQQQQQMQMQQMLLQRQQQQQQQQQQQQQHQQQQQQPQHQQQQQQQQQQGRDRAHLLNGGGANGLVGNPSTANAIATKMYEERLKLPLQRDSLEDAAMKQRFGDQILDPNHASILKSSAATGQPSGQVLHGAAGAMSPQIQGRNQQLPGSTPDIKTEINPLNPRAPGPESLMAIPGSNQGGNNLTLKGWPLTGLEQLRSGLLQHQKPFIQNPQPFHQLPMLTQHQQQLMLAQQNLASPSASDESRRLRMLLNNRNMGVGKDGLSNPVGDVVSNVGSPLQAGGPPFPRADTDMLMKMKLAQLQHQQQQNANPQQQQLQQHSLSNQQSQSSNHNMHQQDKVGGGGGSVTGDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSGSTHTPGDVISMPSLPHNGSSSKPLMMFGTDGTGTLTSPSNQLADVDRFVEDASLDDNVESFLSHDDNDPRDPVGRMDVSKGFTFSEVNSVRASTSKVVCTHFSSDGKLLASGGHDKKAVLWYTDSLKQKATIEEHSFLITDVRFSPTLPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDYDGEIRYWSINNGSCARVAKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDSSGEYLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDKFVKLWK 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04505 886 Pfam LisH 10 36 IPR006594 GO:0005515
Vifa3g04505 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 854 886 IPR001680 GO:0005515
Vifa3g04505 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 687 729 IPR001680 GO:0005515
Vifa3g04505 886 MobiDBLite consensus disorder prediction 89 112 - -
Vifa3g04505 886 Gene3D - 736 886 IPR015943 GO:0005515
Vifa3g04505 886 SUPERFAMILY WD40 repeat-like 596 886 IPR036322 GO:0005515
Vifa3g04505 886 MobiDBLite consensus disorder prediction 139 162 - -
Vifa3g04505 886 MobiDBLite consensus disorder prediction 249 266 - -
Vifa3g04505 886 SMART WD40_4 680 720 IPR001680 GO:0005515
Vifa3g04505 886 SMART WD40_4 595 634 IPR001680 GO:0005515
Vifa3g04505 886 SMART WD40_4 806 845 IPR001680 GO:0005515
Vifa3g04505 886 SMART WD40_4 762 800 IPR001680 GO:0005515
Vifa3g04505 886 SMART WD40_4 637 676 IPR001680 GO:0005515
Vifa3g04505 886 SMART WD40_4 847 886 IPR001680 GO:0005515
Vifa3g04505 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 687 725 - -
Vifa3g04505 886 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 886 - -
Vifa3g04505 886 Pfam WD domain, G-beta repeat 603 633 IPR001680 GO:0005515
Vifa3g04505 886 Pfam WD domain, G-beta repeat 683 720 IPR001680 GO:0005515
Vifa3g04505 886 Pfam WD domain, G-beta repeat 849 886 IPR001680 GO:0005515
Vifa3g04505 886 Pfam WD domain, G-beta repeat 765 799 IPR001680 GO:0005515
Vifa3g04505 886 Pfam WD domain, G-beta repeat 642 676 IPR001680 GO:0005515
Vifa3g04505 886 SMART Lish 8 40 IPR006594 GO:0005515
Vifa3g04505 886 Coils Coil 111 145 - -
Vifa3g04505 886 CDD WD40 598 886 - -
Vifa3g04505 886 MobiDBLite consensus disorder prediction 367 538 - -
Vifa3g04505 886 Gene3D - 585 735 IPR015943 GO:0005515
Vifa3g04505 886 MobiDBLite consensus disorder prediction 249 288 - -
Vifa3g04505 886 MobiDBLite consensus disorder prediction 456 538 - -
Vifa3g04505 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 644 679 IPR001680 GO:0005515
Vifa3g04505 886 MobiDBLite consensus disorder prediction 139 179 - -
Vifa3g04505 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 854 886 - -
Vifa3g04505 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 643 IPR001680 GO:0005515
Vifa3g04505 886 ProSitePatterns Trp-Asp (WD) repeats signature. 663 677 IPR019775 -
Vifa3g04505 886 MobiDBLite consensus disorder prediction 408 445 - -
Vifa3g04505 886 FunFam Transcriptional corepressor LEUNIG 730 886 - -
Vifa3g04505 886 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vifa3g04505 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 644 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04505 Vifa-Chr3 1288397222 1288403759 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04505 620 849 U-box Gene Family AT2G33340 30.435 1.37e-18 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vifa3g04505 WD40 0.047 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04505 - - gmx:100779972 1201.04