Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04504 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATCCATGATTATCTTGTGAAGAGGGATTTGAAAGTTTCAGCTCAGGCTTTTCAGGCTGAAGGGAAAGTGTCATCTGATCCTGTTGCTATTGATGCCCCGGGAGGATTTTTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCTAGGACGAATGAGAAGCATTCGGAAGTTGCGGCGTCTTATATTGAGACTCAGTTAATTAAGGCGAGGGAGCAGCAACAACAGCAACAGCAGCAGCAGCCACAACCTCAGCAGTCACAACATCAACAACAGCAGAATCAACAACAACAGCAGATGCAGATGCAACAGATGCTGTTACAGAGGCAGCAGCAGCAACAACAGCAACAGCAGCAGCAACAACAGCACCAGCAACAACAGCAGCAACCACAGCATCAACAACAGCAGCAGCAGCAGCAGCAACAGGGTAGGGATAGGGCTCATCTCTTGAATGGTGGTGGTGCAAATGGATTGGTTGGAAACCCTAGCACTGCAAATGCAATTGCAACGAAGATGTATGAGGAAAGGTTAAAACTCCCCCTTCAAAGAGATTCTTTGGAAGATGCTGCAATGAAGCAAAGATTTGGAGACCAAATATTGGACCCAAATCATGCCTCAATTTTGAAGTCATCTGCTGCTACTGGCCAACCGTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAATTCAAGGTCGTAATCAGCAACTACCAGGGTCTACTCCGGATATAAAAACTGAGATTAATCCTTTAAACCCTAGAGCTCCGGGTCCTGAATCGTTGATGGCAATTCCTGGATCAAATCAAGGTGGCAACAATTTGACTCTGAAAGGGTGGCCACTCACAGGGTTGGAGCAACTTCGTTCTGGTTTACTCCAGCATCAAAAACCTTTCATACAGAATCCACAGCCTTTTCATCAACTTCCAATGTTGACACAACATCAGCAACAGCTTATGTTAGCACAGCAAAACCTGGCGTCACCATCCGCCAGTGATGAAAGTAGAAGACTCAGAATGCTACTGAACAATAGAAATATGGGCGTAGGTAAGGATGGCCTTTCAAATCCTGTTGGTGATGTCGTATCGAATGTTGGATCACCCCTTCAAGCAGGTGGTCCTCCTTTTCCTCGTGCTGATACGGATATGCTAATGAAGATGAAACTGGCTCAGTTACAACACCAACAACAGCAGAATGCGAACCCACAGCAGCAGCAACTTCAACAGCATTCTCTTTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACCGGAGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAACCAGACTGGAAGAAAGAGAAAGCAACCTGTTTCCTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCTAATACAGCAGGCCCATCTCCGAGTTCAGCACCCTCAACTCCGTCAGGCTCAACTCATACCCCTGGTGATGTGATATCAATGCCTTCTTTACCTCATAACGGTAGCTCTTCTAAGCCATTGATGATGTTTGGCACTGATGGCACCGGAACTCTTACCTCACCTTCAAACCAATTGTGGGATGATAAGGATACTGAATTGCAGGCAGATGTGGACCGCTTTGTTGAGGATGCATCTCTTGATGATAACGTTGAGTCTTTTTTATCTCATGATGATAATGACCCTAGAGATCCAGTTGGACGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAATTCTGTCCGTGCAAGCACAAGCAAAGTTGTTTGTACTCATTTCTCATCCGACGGCAAATTGCTCGCAAGTGGCGGCCATGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAGCTACTATTGAAGAGCATTCATTTTTAATTACCGATGTCCGTTTCAGTCCAACCCTGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCCGCGTTTGGGATGTTGACAATCCTGGGTATTCGCTTCGTACTTTCACTGGGCATTCTGCATCAGTTATGTCACTAGACTTTCACCCTAATAAAGAGGACCTTATCTGTTCTTGTGACTACGATGGCGAGATAAGATATTGGAGTATTAATAATGGCAGTTGTGCTAGAGTAGCGAAGGGTGGCACTGCACAAATGAGATTTCAACCTAGGCTAGGGAGATACCTTGCTGCAGCTGCAGAGAACGTTGTCTCTATACTTGATGTCGAGACACAAGCATGCCGATATTCACTGAAGGGTCACACAAAGTCGATACATTCTGTGTGTTGGGATTCATCTGGGGAGTACTTGGCATCTGTCAGCGAGGACTCTGTCAGAGTTTGGACTCTCGGAACTGGAAGTGAAGGGGAATGTGTTCACGAGCTTAGCTGTAACGGCAATAAGTTTCACTCATGCGTCTTCCATCCAACGTACTCGTCACTGCTGGTCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGACAGAGAACAAGACGATGACTCTGTCAGCTCACGACGGTCTTATTGCTGCTCTGGCCGTGTCCACCGTAAACGGTTTGGTTGCTTCAGCTAGTCATGACAAGTTTGTCAAGCTCTGGAAGTGA 2688 0.4568 MSQTNWEADKMLDVYIHDYLVKRDLKVSAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQPQPQQSQHQQQQNQQQQQMQMQQMLLQRQQQQQQQQQQQQQHQQQQQQPQHQQQQQQQQQQGRDRAHLLNGGGANGLVGNPSTANAIATKMYEERLKLPLQRDSLEDAAMKQRFGDQILDPNHASILKSSAATGQPSGQVLHGAAGAMSPQIQGRNQQLPGSTPDIKTEINPLNPRAPGPESLMAIPGSNQGGNNLTLKGWPLTGLEQLRSGLLQHQKPFIQNPQPFHQLPMLTQHQQQLMLAQQNLASPSASDESRRLRMLLNNRNMGVGKDGLSNPVGDVVSNVGSPLQAGGPPFPRADTDMLMKMKLAQLQHQQQQNANPQQQQLQQHSLSNQQSQSSNHNMHQQDKVGGGGGSVTGDGSMSNSFRGNDQVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSGSTHTPGDVISMPSLPHNGSSSKPLMMFGTDGTGTLTSPSNQLWDDKDTELQADVDRFVEDASLDDNVESFLSHDDNDPRDPVGRMDVSKGFTFSEVNSVRASTSKVVCTHFSSDGKLLASGGHDKKAVLWYTDSLKQKATIEEHSFLITDVRFSPTLPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDYDGEIRYWSINNGSCARVAKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDSSGEYLASVSEDSVRVWTLGTGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDKFVKLWK 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04504 895 CDD WD40 607 895 - -
Vifa3g04504 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 696 734 - -
Vifa3g04504 895 Pfam LisH 10 36 IPR006594 GO:0005515
Vifa3g04504 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 653 688 - -
Vifa3g04504 895 MobiDBLite consensus disorder prediction 89 112 - -
Vifa3g04504 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 611 652 IPR001680 GO:0005515
Vifa3g04504 895 FunFam Transcriptional corepressor LEUNIG 739 895 - -
Vifa3g04504 895 MobiDBLite consensus disorder prediction 139 162 - -
Vifa3g04504 895 MobiDBLite consensus disorder prediction 249 266 - -
Vifa3g04504 895 Gene3D - 586 741 IPR015943 GO:0005515
Vifa3g04504 895 Gene3D - 742 895 IPR015943 GO:0005515
Vifa3g04504 895 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 895 - -
Vifa3g04504 895 SMART Lish 8 40 IPR006594 GO:0005515
Vifa3g04504 895 Coils Coil 111 145 - -
Vifa3g04504 895 SUPERFAMILY WD40 repeat-like 605 895 IPR036322 GO:0005515
Vifa3g04504 895 SMART WD40_4 646 685 IPR001680 GO:0005515
Vifa3g04504 895 SMART WD40_4 815 854 IPR001680 GO:0005515
Vifa3g04504 895 SMART WD40_4 689 729 IPR001680 GO:0005515
Vifa3g04504 895 SMART WD40_4 604 643 IPR001680 GO:0005515
Vifa3g04504 895 SMART WD40_4 771 809 IPR001680 GO:0005515
Vifa3g04504 895 SMART WD40_4 856 895 IPR001680 GO:0005515
Vifa3g04504 895 MobiDBLite consensus disorder prediction 367 538 - -
Vifa3g04504 895 Pfam WD domain, G-beta repeat 612 642 IPR001680 GO:0005515
Vifa3g04504 895 Pfam WD domain, G-beta repeat 858 895 IPR001680 GO:0005515
Vifa3g04504 895 Pfam WD domain, G-beta repeat 774 808 IPR001680 GO:0005515
Vifa3g04504 895 Pfam WD domain, G-beta repeat 651 685 IPR001680 GO:0005515
Vifa3g04504 895 Pfam WD domain, G-beta repeat 692 729 IPR001680 GO:0005515
Vifa3g04504 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 696 738 IPR001680 GO:0005515
Vifa3g04504 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 863 895 - -
Vifa3g04504 895 MobiDBLite consensus disorder prediction 249 288 - -
Vifa3g04504 895 MobiDBLite consensus disorder prediction 456 538 - -
Vifa3g04504 895 MobiDBLite consensus disorder prediction 139 179 - -
Vifa3g04504 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 653 688 IPR001680 GO:0005515
Vifa3g04504 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 863 895 IPR001680 GO:0005515
Vifa3g04504 895 MobiDBLite consensus disorder prediction 408 445 - -
Vifa3g04504 895 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vifa3g04504 895 ProSitePatterns Trp-Asp (WD) repeats signature. 672 686 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04504 Vifa-Chr3 1288397222 1288403759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04504 629 858 U-box Gene Family AT2G33340 30.435 1.62e-18 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vifa3g04504 WD40 0.047 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04504 - - gmx:100779972 1226.85