Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04490 ATGGAGCGACCTCACGAAAGTCATCATATTATAGAAATAGCTGGGAGTGTCGAGCCTGCAGCTTCTACATCTTCCTCGTCTCGTGTAGACGACTCGCATCGTGAAGAAAGAATAAGTGGAGCGCGGTTGCCTGTTGGTCAGCCTTCAGTTTCTACCTCGGGTGTATCGAATAGTAGGAGTTCTTCGTTAGTAAGAAGGGGGGAGGCTCGTCGGAGTAGGAGTCCTGTGCATTCTGGGTTATGGATATCTATTGAATTGGTTCTATTAGTGAGCCAGATTGTTGCGTCTGTTGTTGTTTTGTCGTTGTCGAGGAATGAGCATCCGCGGACCCCGTTGTTTCAGTGGATAGTGGGGTATGCTTCTGGATGTGTTGCTACGCTGCCTCTTCTTTATTGGCGGTATTATAATCATAATCATATGCGAGAACAGGAGTCAGCTCAGACACGTCAAACATCTCCTCGGGTTAGTGATCCTTCTGGGACATTTCTTTCGATTGCTAGAAGTAATGGAGGAGATGATGGTCAGGCAGCTGCTGCATCTGCCAGAAGCAATCAAACTTCACTATTGATGAATAGAAGAATGAAGATACTTGTGGAATACTTCAAAATATCCTTAGATTGCTTTTTTGCTGTGTGGTTTGTTGTTGGAAACGTATGGATCTTTGGGGGACGATCTTCTGTTGATGAAGCTCCTAACTTGTATAGGTTATGTATAGTGTTTCTTGCATTTAGCTGTATCGGTTATGCTATGCCTTTCATTCTCTGTTCAACCATATGCTGCTGTCTCCCGTGTATAATTTCCATTCTTGGTGTTAGAGAGGATCTGTCACAAAACAGAGGAGCAACTTCTGAATCCATCAATGCGCTGCCAGTTTACAAGTTCAAGATGAAGAAACATAAAAGAAGTGGTGAAAACTCTGGTAATGTAGAAGGTGGAGTTGTGGCTGCAGGAACTGCAAAAGAGCGTGTGATCTCTGGTGAAGATGCGGTTTGCTGCATCTGCCTTGCAAAGTATGAAAATAACGACGAGCTTAGAGAACTGCCTTGTTCTCATCTTTTCCACAAAGACTGTGTTGATAAGTGGTTGAAGATAAATGCATTGTGCCCTCTTTGCAAGAGTGAGGTTGGTGAAGACCCAACAGGATTGGGGTCTGGAGAAGATGCCACCCAAACAACAGGATGA 1182 0.4433 MERPHESHHIIEIAGSVEPAASTSSSSRVDDSHREERISGARLPVGQPSVSTSGVSNSRSSSLVRRGEARRSRSPVHSGLWISIELVLLVSQIVASVVVLSLSRNEHPRTPLFQWIVGYASGCVATLPLLYWRYYNHNHMREQESAQTRQTSPRVSDPSGTFLSIARSNGGDDGQAAAASARSNQTSLLMNRRMKILVEYFKISLDCFFAVWFVVGNVWIFGGRSSVDEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDLSQNRGATSESINALPVYKFKMKKHKRSGENSGNVEGGVVAAGTAKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGEDPTGLGSGEDATQTTG 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04490 393 SMART ring_2 331 371 IPR001841 -
Vifa3g04490 393 MobiDBLite consensus disorder prediction 1 70 - -
Vifa3g04490 393 FunFam E3 ubiquitin-protein ligase 314 380 - -
Vifa3g04490 393 SUPERFAMILY RING/U-box 321 378 - -
Vifa3g04490 393 ProSiteProfiles Zinc finger RING-type profile. 331 372 IPR001841 -
Vifa3g04490 393 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 5 375 - -
Vifa3g04490 393 MobiDBLite consensus disorder prediction 45 63 - -
Vifa3g04490 393 Pfam Ring finger domain 331 372 IPR001841 -
Vifa3g04490 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 379 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04490 Vifa-Chr3 1286113556 1286118943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04490 67 377 C3H Transcription Factor Family AT1G80400 58.466 2.35e-140 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04490 - - gmx:100778728 590.112