Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04489 ATGGAGCGACCTCACGAAAGTCATCATATTATAGAAATAGCTGGGAGTGTCGAGCCTGCAGCTTCTACATCTTCCTCGTCTCGTGTAGACGACTCGCATCGTGAAGAAAGAATAAGTGGAGCGCGGTTGCCTGTTGGTCAGCCTTCAGTTTCTACCTCGGGTGTATCGAATAGTAGGAGTTCTTCGTTAGTAAGAAGGGGGGAGGCTCGTCGGAGTAGGAGTCCTGTGCATTCTGGGTTATGGATATCTATTGAATTGGTTCTATTAGTGAGCCAGATTGTTGCGTCTGTTGTTGTTTTGTCGTTGTCGAGGAATGAGCATCCGCGGACCCCGTTGTTTCAGTGGATAGTGGGGTATGCTTCTGGATGTGTTGCTACGCTGCCTCTTCTTTATTGGCGGTATTATAATCATAATCATATGCGAGAACAGGAGTCAGCTCAGACACGTCAAACATCTCCTCGGGTTAGTGATCCTTCTGGGACATTTCTTTCGATTGCTAGAAGTAATGGAGGAGATGATGGTCAGGCAGCTGCTGCATCTGCCAGAAGCAATCAAACTTCACTATTGATGAATAGAAGAATGAAGATACTTGTGGAATACTTCAAAATATCCTTAGATTGCTTTTTTGCTGTGTGGTTTGTTGTTGGAAACGTATGGATCTTTGGGGGACGATCTTCTGTTGATGAAGCTCCTAACTTGTATAGAGAGGATCTGTCACAAAACAGAGGAGCAACTTCTGAATCCATCAATGCGCTGCCAGTTTACAAGTTCAAGATGAAGAAACATAAAAGAAGTGGTGAAAACTCTGGTAATGTAGAAGGTGGAGTTGTGGCTGCAGGAACTGCAAAAGAGCGTGTGATCTCTGGTGAAGATGCGGTTTGCTGCATCTGCCTTGCAAAGTATGAAAATAACGACGAGCTTAGAGAACTGCCTTGTTCTCATCTTTTCCACAAAGACTGTGTTGATAAGTGGTTGAAGATAAATGCATTGTGCCCTCTTTGCAAGAGTGAGGTTGGTGAAGACCCAACAGGATTGGGGTCTGGAGAAGATGCCACCCAAACAACAGGATGA 1071 0.4491 MERPHESHHIIEIAGSVEPAASTSSSSRVDDSHREERISGARLPVGQPSVSTSGVSNSRSSSLVRRGEARRSRSPVHSGLWISIELVLLVSQIVASVVVLSLSRNEHPRTPLFQWIVGYASGCVATLPLLYWRYYNHNHMREQESAQTRQTSPRVSDPSGTFLSIARSNGGDDGQAAAASARSNQTSLLMNRRMKILVEYFKISLDCFFAVWFVVGNVWIFGGRSSVDEAPNLYREDLSQNRGATSESINALPVYKFKMKKHKRSGENSGNVEGGVVAAGTAKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINALCPLCKSEVGEDPTGLGSGEDATQTTG 356
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04489 356 SUPERFAMILY RING/U-box 284 341 - -
Vifa3g04489 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 342 IPR013083 -
Vifa3g04489 356 SMART ring_2 294 334 IPR001841 -
Vifa3g04489 356 Pfam Ring finger domain 294 335 IPR001841 -
Vifa3g04489 356 MobiDBLite consensus disorder prediction 1 70 - -
Vifa3g04489 356 FunFam E3 ubiquitin-protein ligase 277 343 - -
Vifa3g04489 356 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 5 235 - -
Vifa3g04489 356 MobiDBLite consensus disorder prediction 45 63 - -
Vifa3g04489 356 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa3g04489 Vifa-Chr3 1286113556 1286118943 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04489 67 340 C3H Transcription Factor Family AT1G80400 48.562 1.17e-105 314
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04489 - - gmx:100778728 510.375