Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04485 ATGAGTCCTTCAAAAAAAGAAGAAGAAAGAGTTGAGAGAATAATTAGAGGTCTCTTAAAACTTCCTGAAAATAAAAGATGCATCAATTGCAATGCCTTGGGACCACAATATGCATGTACAACATTCTCAACATTTGTCTGCACAAATTGCAGTGGTTTACATCGAGAGTTTACACATCGAGTAAAATCGGTATCAATGGCAAAGTTCACTCCCGAAGAAGTCACTGCTCTTCAAGCTGGTGGCAATGAGAGAGCAAAGCAGATTTATTTCAAAGGATGGGATCCTATGCGACATTCGTATCCCGATTCTAGTAATATGCACAGACTTAGAGATTTTATCAAGCATGTCTATGAGGACAGAAAATATACCGGCGAAATAAGTCAAGAAAATCTTCCCAAGATTAAATTGAATAACAAGGAGGAGTCATATGAGAGTAAGAAGATTAATTCGTTTCGATTAGAGTTAGTAAGTCCTAAGTCAAGTCCGGGTCCAAGAAACAGTACACGTGAAAGAAGCGACGGCGCGAATTTAAGATATGTATATGATGAAAGCAGAAGTCCTAAGTATGTACGAAAGTATTCAAGATATGGAGGGTTGAGCAAAAGTCCTATGAAATTCGAGGTTGTTGATGATAGGTTTCGGGACGACGACGAGTATAGAAACCACAGGCAATCAAATATAGACTCAAAGCTAGGACAACTTTCATTTGATGGTCGTAAGAATGTGGACAGACTCCCACCACCAGTTCAAAGATCTTTGGGTGAAATCAGGACGAAGCATGATTCATCTTTACAAGTAACAACTTCGGGTGGAGAAGGTTCTATTGAGAAAAAACCCTTGGCGCAAATAAGTAATAAACCAAGAAGCTTCAATGATTCGAGTATGAAGTCTCAAGCTTCTGAAACTGCTATTGTCGCTGTTCAAGAAACACCGAGTGTGACACAGTCTCAAACTTCTGAAACTGCTATTGTCGCTGTACAAGAAACACCGAGTATGACACAGGAAGGTGAAAGTAATTGGGCTTCATTCGAAACTTCTACCGAGGAAAATGTTCCTAAAACTCCAAACACAAACACCATTAAATTTTACGCAACGGAACCAACACCTAAAGCAAATACTTCAAGTCAGTTAGACCTTTTACTTCTTGAATTATCAGGTCCTCCGCCACAACCTGAGCTAAATGGATTAGAAAACTCCGTTGAAGTTTCACATGGAGATAAACCACGAATAGAAGATCCCATTGAAGTTTCACAAGCACATGAACCACTAAGCATGCAAGATTCTCCTTCTGTTTCCGTTGGTTGTAGTTCAACAACACAACCTATAAAATTGCCAAACAATGTAGTTTCAAATAATGAGTCATCGTTTTCTCCTAATACACATTCATCATCACAAGCTTTTGGCGAACGATCTTATGAAACCACCTCAAATCCTACTCAAAACACCAAACCTGATATTGGCTCCAAGCCTAGTACGACAAAACTCAAGTCTAGTGGAAGAATGGAACTTCCAGAGGACCTTTTTGCTACAAGCTACTTATCTGGTCCTGCACCACATGCAGGTTGGAAGAATGTTCAACATCATGTCATGGAATATGGAAATAGTATGCCGTATTATTCTAATGCAGCGCCTCACTTAGCACTTCCCGTTGCACCAAAACCCATGAACCCTTTTGAAGTAACTGAAGGGAGAAGTATAGTGCCCGCATCATCGTCTCCGACTCTGGCATCAACACATGGTGTGCTACCAAATGTATCACATAGAACAGGACTCATGCATGCTTCAAGTCTTGGTTCTTTAGACACAATGATGCCTTATTCCACAAGTTATGCATCCCCATTTACTGGTGTGTGCTTTGATCAAGTTAATAATGAAGAGCAACTTATTAGATCACAAAGATTTGATACCTTCAATGGCGGCTTAACTCGTTATGCATCTCTCGATAACATTCAACAATCGTACGGGGGATATGGAACACATGGAACTCCGAATTCTTTTTCCTATACAGGAGGAAATCCATTTGGATAG 2028 0.3994 MSPSKKEEERVERIIRGLLKLPENKRCINCNALGPQYACTTFSTFVCTNCSGLHREFTHRVKSVSMAKFTPEEVTALQAGGNERAKQIYFKGWDPMRHSYPDSSNMHRLRDFIKHVYEDRKYTGEISQENLPKIKLNNKEESYESKKINSFRLELVSPKSSPGPRNSTRERSDGANLRYVYDESRSPKYVRKYSRYGGLSKSPMKFEVVDDRFRDDDEYRNHRQSNIDSKLGQLSFDGRKNVDRLPPPVQRSLGEIRTKHDSSLQVTTSGGEGSIEKKPLAQISNKPRSFNDSSMKSQASETAIVAVQETPSVTQSQTSETAIVAVQETPSMTQEGESNWASFETSTEENVPKTPNTNTIKFYATEPTPKANTSSQLDLLLLELSGPPPQPELNGLENSVEVSHGDKPRIEDPIEVSQAHEPLSMQDSPSVSVGCSSTTQPIKLPNNVVSNNESSFSPNTHSSSQAFGERSYETTSNPTQNTKPDIGSKPSTTKLKSSGRMELPEDLFATSYLSGPAPHAGWKNVQHHVMEYGNSMPYYSNAAPHLALPVAPKPMNPFEVTEGRSIVPASSSPTLASTHGVLPNVSHRTGLMHASSLGSLDTMMPYSTSYASPFTGVCFDQVNNEEQLIRSQRFDTFNGGLTRYASLDNIQQSYGGYGTHGTPNSFSYTGGNPFG 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04485 675 MobiDBLite consensus disorder prediction 156 176 - -
Vifa3g04485 675 MobiDBLite consensus disorder prediction 422 499 - -
Vifa3g04485 675 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Vifa3g04485 675 MobiDBLite consensus disorder prediction 385 407 - -
Vifa3g04485 675 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Vifa3g04485 675 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vifa3g04485 675 MobiDBLite consensus disorder prediction 156 170 - -
Vifa3g04485 675 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Vifa3g04485 675 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Vifa3g04485 675 PANTHER ARFGAP/RECO-RELATED 4 675 IPR044820 GO:0005096
Vifa3g04485 675 MobiDBLite consensus disorder prediction 422 498 - -
Vifa3g04485 675 CDD ArfGap_AGFG 12 122 - -
Vifa3g04485 675 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Vifa3g04485 675 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vifa3g04485 675 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vifa3g04485 675 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vifa3g04485 675 MobiDBLite consensus disorder prediction 254 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04485 Vifa-Chr3 1284102630 1284106424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04485 12 122 C2H2 Transcription Factor Family AT4G05330 35.345 6.64e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04485 - - psat:127095914 905.205