Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04482 ATGAAACTAAAAGCACTGCATCCATTAATAAACTTTGCTGCATTAGTCTTGTTGGTAGAAGCAGTTGCATCTGATCATCCCCAACAAGTCCTACCAGGCTGCAATTCCACATGTGGAGATATACAAATTCCATATCCATTTGGCATAGGAAACTCAACAACACAAGATAACACACCATGTTACATGGATTCCAAATTTGAAGTCACTTGTGAAAGCAACTCCGAATTAAAGTATGGTACGAGTATCCGAGTCCTAGGCATAAATCCAGAAGGTCAAATGGTATTGTCGTTTTTCGTCTCGTCTCTTTGTTCTAATAGTAATGAAACTGCAAATCAACCTTTTCTCACAGTTCCTTCTTTCACAATTTCAAGCACGGAAAACAAATTCATAACCGTCGGCTGCGACGGTTATGGATATCTCAATAGTAATTACGAGGGTGCCACTTATTCAACAGGGTGCTTAACAAGATGTTATGAATATGATCCTAAAATGGTTATTGGCAATAACACTGGAAAGTGCACTGGTTTAGGGTGTTGCCAAGTGGATATTCCTCCACATATGAAAAATATCACTATAGAAGCATTTCGATTCCCAAATTCTACACCTTCTGAGAAATATAATTGTAGCTATTCATTCATTGCAAAACAAGGATCTTATAACTTTTCTGTAGATCATATCAATCATCTACCTTATGAAACTTTTCCCATGGTTGTTAATTGGGCTGTTACAAGTGAGTCATGTCAAAAAGCCCAAACTTCAGCTAATTATGCCTGCAAGAACAATAGTGAGTGTGTCGATATGGATTTGGATTATGACGGTTATAGATGCAATTGTTCGGAAGGTTTTGAAGGAAATCCATACCTTCCTGGAGGCTGCTCAGACATTGACGAATGCGCAACAGAATATCATGGATGCAAAAGGAAAGCAAATTGTAACAACACTTTTGGGAATTACACTTGTTTCTGTCCTGAGGGGCAAATCGGAGATGGAACAGAGGAAGGAGGATGCCAACTAGAACATAATGAAAATGCAAATAGAATAGTACTACCTAGTGTCCTTGGAGCAGGAGCAGTATTTATTGTTCTATTTGTAATGATAATTTTCTATTTAATAAACCAAAAAAGGAAACTTACCAAATTGAAAGAGAAATTCTACAAGCAGAATGGAGGTTCTATTTTGGAACAGAAACTTAGTCAAAGACAAGACTCGTCATCATCTCAAATAGCTCATATTTTCAAAGAAAATGAACTAAAGAAAGCCACAAACAACTTTGATGAGAGCTTAATCATAGGTAGGGGAGGTTATGGTACAGTTTTCAAAGGGGAACTAGAAGATAATATAATTGTTGCTATCAAAAAGTCCAAAACAATAGATGAAAGCCAAATTGAACAATTCATCAATGAGGTGGATGTTGTCTCTCAAATAAATCACAGAAATGTGGTTAAACTCTTGGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAGTTTGTTTCCAATGGTACCCTTTCTGATTTTATACACACGGAAATAGGTAAGGTGAATAATGTATCGTGGAAAACTCGTCTTAAGATAGCAGCAGAAGTAGCTGGAGCTTTGTCATATCTACATTCAGCTGCCTCAATACCGATTATCCACAGAGATGTCAAGAGTGATAACATTCTCTTAGATGGAACCAACACTGCCAAAGTATCTGATTTTGGAGCTTCAAGATTGGTTCCACTCGACCAAATGGAAGTAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGACCCAGAGTATATGCAAACAAGCCAATTGACTGAGAAAAGCGATGTATATAGCTTTGGAGTAGTTCTCGTGGAGCTTCTAACAGGGGAGAAGCCTTTTAGTTTTGGGAGGGCAGAAGACAGAAGAAGTCTTGCTATGCACTTTCTGTCTTGCTTGAAAAAAAATAATGTGTTTGAAGTTATTCAAGATGGTATGTTGAACGAAGAAAACGAACAACAGATCAAGGAGGTAGCTGTTCTTGCGGCAAAGTGTTTAAGACTAAGAGGAGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGATAAACAATCTTGGATCAATGAAGACGTAAATGTAGAGGAGAGTCACTACTTGCTTCATGGATCATCATCGTCTAGCATTTATGAACTTGGTGATAGCAGCAAACAAGAAGATTATGGGTATGACAGCTTGAAAGATCATGTATTGATTGCCTTGGATGATGGAAGATGA 2274 0.3799 MKLKALHPLINFAALVLLVEAVASDHPQQVLPGCNSTCGDIQIPYPFGIGNSTTQDNTPCYMDSKFEVTCESNSELKYGTSIRVLGINPEGQMVLSFFVSSLCSNSNETANQPFLTVPSFTISSTENKFITVGCDGYGYLNSNYEGATYSTGCLTRCYEYDPKMVIGNNTGKCTGLGCCQVDIPPHMKNITIEAFRFPNSTPSEKYNCSYSFIAKQGSYNFSVDHINHLPYETFPMVVNWAVTSESCQKAQTSANYACKNNSECVDMDLDYDGYRCNCSEGFEGNPYLPGGCSDIDECATEYHGCKRKANCNNTFGNYTCFCPEGQIGDGTEEGGCQLEHNENANRIVLPSVLGAGAVFIVLFVMIIFYLINQKRKLTKLKEKFYKQNGGSILEQKLSQRQDSSSSQIAHIFKENELKKATNNFDESLIIGRGGYGTVFKGELEDNIIVAIKKSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSDFIHTEIGKVNNVSWKTRLKIAAEVAGALSYLHSAASIPIIHRDVKSDNILLDGTNTAKVSDFGASRLVPLDQMEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGEKPFSFGRAEDRRSLAMHFLSCLKKNNVFEVIQDGMLNEENEQQIKEVAVLAAKCLRLRGEERPSMKEVAMELEGMRLMDKQSWINEDVNVEESHYLLHGSSSSSIYELGDSSKQEDYGYDSLKDHVLIALDDGR 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04482 757 SUPERFAMILY Protein kinase-like (PK-like) 400 696 IPR011009 -
Vifa3g04482 757 SUPERFAMILY EGF/Laminin 294 329 - -
Vifa3g04482 757 Pfam Wall-associated receptor kinase galacturonan-binding 34 93 IPR025287 GO:0030247
Vifa3g04482 757 ProSitePatterns Calcium-binding EGF-like domain signature. 294 320 IPR018097 GO:0005509
Vifa3g04482 757 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 311 322 IPR000152 -
Vifa3g04482 757 Gene3D Laminin 244 336 - -
Vifa3g04482 757 FunFam Wall-associated receptor kinase 2 392 499 - -
Vifa3g04482 757 Pfam Protein tyrosine and serine/threonine kinase 429 695 IPR001245 GO:0004672|GO:0006468
Vifa3g04482 757 SMART serkin_6 424 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04482 757 Gene3D Phosphorylase Kinase; domain 1 388 499 - -
Vifa3g04482 757 FunFam Fibrillin 2 290 333 - -
Vifa3g04482 757 FunFam Wall-associated receptor kinase 2 500 718 - -
Vifa3g04482 757 CDD STKc_IRAK 430 698 - -
Vifa3g04482 757 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 704 IPR045274 GO:0007166
Vifa3g04482 757 Gene3D Transferase(Phosphotransferase) domain 1 500 719 - -
Vifa3g04482 757 ProSiteProfiles Protein kinase domain profile. 424 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04482 757 SMART egf_5 246 293 IPR000742 -
Vifa3g04482 757 SMART egf_5 297 337 IPR000742 -
Vifa3g04482 757 SMART egfca_6 294 337 IPR001881 GO:0005509
Vifa3g04482 757 Pfam Calcium-binding EGF domain 294 326 IPR001881 GO:0005509
Vifa3g04482 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Vifa3g04482 757 ProSitePatterns Protein kinases ATP-binding region signature. 430 453 IPR017441 GO:0005524
Vifa3g04482 757 CDD EGF_CA 258 284 - -
Vifa3g04482 757 ProSiteProfiles EGF-like domain profile. 294 332 IPR000742 -
Vifa3g04482 757 CDD EGF_CA 294 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04482 Vifa-Chr3 1281894525 1281897631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04482 1 757 Receptor kinase-like Gene Family AT1G21230 43.523 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifa3g04482 PK_Tyr_Ser-Thr 4.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04482 - - tpra:123893723 1211.44