Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04481 ATGCATCCATTAATAATGTTTGCTGCATTAACCTCATTAGTAGAAGCAGTTACATCTGATCATCCACCCCAACAAGCCCTACCAGGCTGCAAATCCACTTGTGGAGATATCCAAATTCCATATCCATTTGGCATAGGAAACTCAACAACTCAAGATCAGACACCATGTTACATGAATTCCAAATTCGTACTCACTTGTAAAAACAACTCCAAATTAATCCGTGGTAGAAATATTCAAGTCCTGGACATAAATCCTAAAGGCCAAATGGTGTTTTCCTTTTTCGTCTCGTATTTTTGTACTAATAGTAGTAGTAATAGTACTGCAAATTCTCCTTTTCTTAGAGTTCCTTCTTTGACCATTTCAAGCACAGAAAACAAATTCATAACAGTCGGTTGCGACAGTTATGGATATCTCAATAGTAATTTCAAGGGTGCCACTTATTCAACAGGTTGCTTAACAAGATGTTATGATTTTGATCCTAAAATTGTTATTGGCAATAACACTGGAAAATGCACTGGTTTAGGCTGTTGCCAAGTGGATATTCCTCCACTTATGAGAAATATCAGTATACAATCATCTCAATTCCCAAATTCTACACCATCTGAGAAACATTATTGTAGCTATTCCTTCATTGCAAAACAAGGATCTTATAGTTTTTCTGTAGATCATTTAAATAATCTACCTAAGAAAAGATTTCCCATGGTTGTTAATTGGGCTGTTTCGAGTGACTCGTGTCAAATAGCCCAGACTAAAGCTAATTATGCCTGCAAGGAAAATAGTGACTGTGTTGATAGCGATCCGGATTATGACGGTTATAGATGCAACTGTTCGAAAGGTTTTGAAGGAAATCCATACCTTCCTGGAGGCTGCTCAGACATTGACGAATGCGCAACAGAATATCATGGATGCAAAAGGAAAGCAAATTGTAACAACACTTTTGGGAATTACACTTGTTTCTGTCCTGAGGGGCAAATCGGAGATGGAACAGAGGAAGGAGGATGCCAACTAGAACATAATGAAAATGCAAATAGAATAGTACTACCTAGTGTCCTTGGAGCAGGAGCAGTATTTATTGTTCTATTTGTAATGATAATTTTCTATTTAATAAACCAAAAAAGGAAACTTACCAAATTGAAAGAGAAATTCTACAAGCAGAATGGAGGTTCTATTTTGGAACAGAAACTTAGTCAAAGACAAGACTCGTCATCATCTCAAATAGCTCATATTTTCAAAGAAAATGAACTAAAGAAAGCCACAAACAACTTTGATGAGAGCTTAATCATAGGTAGGGGAGGTTATGGTACAGTTTTCAAAGGGGAACTAGAAGATAATATAATTGTTGCTATCAAAAAGTCCAAAACAATAGATGAAAGCCAAATTGAACAATTCATCAATGAGGTGGATGTTGTCTCTCAAATAAATCACAGAAATGTGGTTAAACTCTTGGGGTGTTGTCTAGAAACAGAAGTTCCTTTGTTGGTTTATGAGTTTGTTTCCAATGGTACCCTTTCTGATTTTATACACACGGAAATAGGTAAGGTGAATAATGTATCGTGGAAAACTCGTCTTAAGATAGCAGCAGAAGTAGCTGGAGCTTTGTCATATCTACATTCAGCTGCCTCAATACCGATTATCCACAGAGATGTCAAGAGTGATAACATTCTCTTAGATGGAACCAACACTGCCAAAGTATCTGATTTTGGAGCTTCAAGATTGGTTCCACTCGACCAAATGGAAGTAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGACCCAGAGTATATGCAAACAAGCCAATTGACTGAGAAAAGCGATGTATATAGCTTTGGAGTAGTTCTCGTGGAGCTTCTAACAGGGGAGAAGCCTTTTAGTTTTGGGAGGGCAGAAGACAGAAGAAGTCTTGCTATGCACTTTCTGTCTTGCTTGAAAAAAAATAATGTGTTTGAAGTTATTCAAGATGGTATGTTGAACGAAGAAAACGAACAACAGATCAAGGAGGTAGCTGTTCTTGCGGCAAAGTGTTTAAGACTAAGAGGAGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGATAAACAATCTTGGATCAATGAAGACGTAAATGTAGAGGAGAGTCACTACTTGCTTCATGGATCATCATCATCTAGCATTTATGAACTTGGTGATAGCAGCAAACAAGATTATGGGTATGACAGCTTGAAAGATCATGTATTGATTGCCTTGGATGATGGAAGATGA 2265 0.3757 MHPLIMFAALTSLVEAVTSDHPPQQALPGCKSTCGDIQIPYPFGIGNSTTQDQTPCYMNSKFVLTCKNNSKLIRGRNIQVLDINPKGQMVFSFFVSYFCTNSSSNSTANSPFLRVPSLTISSTENKFITVGCDSYGYLNSNFKGATYSTGCLTRCYDFDPKIVIGNNTGKCTGLGCCQVDIPPLMRNISIQSSQFPNSTPSEKHYCSYSFIAKQGSYSFSVDHLNNLPKKRFPMVVNWAVSSDSCQIAQTKANYACKENSDCVDSDPDYDGYRCNCSKGFEGNPYLPGGCSDIDECATEYHGCKRKANCNNTFGNYTCFCPEGQIGDGTEEGGCQLEHNENANRIVLPSVLGAGAVFIVLFVMIIFYLINQKRKLTKLKEKFYKQNGGSILEQKLSQRQDSSSSQIAHIFKENELKKATNNFDESLIIGRGGYGTVFKGELEDNIIVAIKKSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSDFIHTEIGKVNNVSWKTRLKIAAEVAGALSYLHSAASIPIIHRDVKSDNILLDGTNTAKVSDFGASRLVPLDQMEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGEKPFSFGRAEDRRSLAMHFLSCLKKNNVFEVIQDGMLNEENEQQIKEVAVLAAKCLRLRGEERPSMKEVAMELEGMRLMDKQSWINEDVNVEESHYLLHGSSSSSIYELGDSSKQDYGYDSLKDHVLIALDDGR 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04481 754 CDD EGF_CA 292 327 - -
Vifa3g04481 754 SMART egf_5 244 291 IPR000742 -
Vifa3g04481 754 SMART egf_5 295 335 IPR000742 -
Vifa3g04481 754 Pfam Calcium-binding EGF domain 292 324 IPR001881 GO:0005509
Vifa3g04481 754 ProSitePatterns Calcium-binding EGF-like domain signature. 292 318 IPR018097 GO:0005509
Vifa3g04481 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 544 556 IPR008271 GO:0004672|GO:0006468
Vifa3g04481 754 CDD STKc_IRAK 428 696 - -
Vifa3g04481 754 SUPERFAMILY Protein kinase-like (PK-like) 398 694 IPR011009 -
Vifa3g04481 754 ProSiteProfiles Protein kinase domain profile. 422 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04481 754 FunFam Wall-associated receptor kinase 2 498 716 - -
Vifa3g04481 754 FunFam Fibrillin 2 288 331 - -
Vifa3g04481 754 SMART egfca_6 292 335 IPR001881 GO:0005509
Vifa3g04481 754 ProSitePatterns Protein kinases ATP-binding region signature. 428 451 IPR017441 GO:0005524
Vifa3g04481 754 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 701 IPR045274 GO:0007166
Vifa3g04481 754 Pfam Wall-associated receptor kinase galacturonan-binding 30 89 IPR025287 GO:0030247
Vifa3g04481 754 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 309 320 IPR000152 -
Vifa3g04481 754 Gene3D Phosphorylase Kinase; domain 1 386 497 - -
Vifa3g04481 754 SUPERFAMILY EGF/Laminin 292 327 - -
Vifa3g04481 754 Pfam Protein tyrosine and serine/threonine kinase 427 693 IPR001245 GO:0004672|GO:0006468
Vifa3g04481 754 SMART serkin_6 422 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04481 754 Gene3D Transferase(Phosphotransferase) domain 1 498 717 - -
Vifa3g04481 754 ProSiteProfiles EGF-like domain profile. 292 330 IPR000742 -
Vifa3g04481 754 Gene3D Laminin 241 334 - -
Vifa3g04481 754 FunFam Wall-associated receptor kinase 2 390 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04481 Vifa-Chr3 1281885927 1281888770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04481 1 754 Receptor kinase-like Gene Family AT1G21230 44.125 0.0 575
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifa3g04481 PK_Tyr_Ser-Thr 4.4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04481 - - tpra:123893723 1195.65