Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04480 ATGGGTGAGGTGGCAGTGTTGCACTCTGAGCCTTTGCACTTTGAATGCAATGACACCAAACATATGACAGAAAAAGATGTCTATCCTCCAAATTCAAATCCGGAATCCTTGCCCGGAGAAGAATCAAGTCAATCTATAAACACAAATGATCTGCAAGATAAAGAATATATGGAACATGGATGTCAACACTACCGGAGAAGATGTCGAATCAGGGCCCCCTGTTGCAATGAGATTTTTGACTGCCGCCATTGTCACAATGAGGCAAAAAATGATATCAACATAGATTATAAGCATAGACATGACATGCCCAGACACCAAGTCAAACAGGTGATATGTTCACTTTGTGGCACTGAACAAGAGGTTCAGCAAAACTGTACTAATTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGGACATGCAAGCTCTTTGACGATGATATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGCAGAACTGGTGGACATGAGAATTTCTTCCACTGTAATAAGTGTGGTTGTTGCTACTCAACTCTGCTGAAAAACAGTCACCCCTGTGTGGAAGGAGCAATGCATCATGATTGCCCCGTTTGTTTTGAGTATTTGTTTGATTCAAGAAATGATGTCATTGTTATGCCGTGCGGTCATACAATCCACAAAAGCTGTCTGAATGAAATGAGAGAACATTACCAGTATGCATGCCCCCTCTGTTCAAAGTCAGTCTGTGATATGTCGAAGGTTTGGGAGAAATTGGACATGGAGATAGCTGCTACGCCAATGCCTGAGTCATATCAGAATAAAATGGTTTGGATTCTGTGCAATGACTGCGGAAAAACTTCTCATGTTAAGTTCCATTTTGTAGCTCAAAAATGCCTCAACTGCAAGTCTTACAACACGCGACAGACAAGAGGCTGA 921 0.4191 MGEVAVLHSEPLHFECNDTKHMTEKDVYPPNSNPESLPGEESSQSINTNDLQDKEYMEHGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDYKHRHDMPRHQVKQVICSLCGTEQEVQQNCTNCGVCMGKYFCGTCKLFDDDISKQQYHCNGCGICRTGGHENFFHCNKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFDSRNDVIVMPCGHTIHKSCLNEMREHYQYACPLCSKSVCDMSKVWEKLDMEIAATPMPESYQNKMVWILCNDCGKTSHVKFHFVAQKCLNCKSYNTRQTRG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04480 306 Pfam CHY zinc finger 61 142 IPR008913 GO:0008270
Vifa3g04480 306 ProSiteProfiles Zinc finger CHY-type profile. 54 130 IPR008913 GO:0008270
Vifa3g04480 306 CDD RING-H2_Pirh2-like 196 240 - -
Vifa3g04480 306 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 41 305 - -
Vifa3g04480 306 SMART ring_2 197 239 IPR001841 -
Vifa3g04480 306 Pfam Ring finger domain 196 239 IPR001841 -
Vifa3g04480 306 Gene3D - 268 306 - -
Vifa3g04480 306 SUPERFAMILY RING/U-box 196 244 - -
Vifa3g04480 306 SUPERFAMILY CHY zinc finger-like 58 132 IPR037274 GO:0008270
Vifa3g04480 306 SUPERFAMILY Zinc hairpin stack 133 190 IPR037275 -
Vifa3g04480 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 242 IPR013083 -
Vifa3g04480 306 Pfam Zinc-ribbon 244 302 IPR039512 -
Vifa3g04480 306 ProSiteProfiles Zinc finger CTCHY-type profile. 132 196 IPR017921 -
Vifa3g04480 306 ProSiteProfiles Zinc finger RING-type profile. 197 240 IPR001841 -
Vifa3g04480 306 MobiDBLite consensus disorder prediction 20 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04480 Vifa-Chr3 1281115428 1281118455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04480 51 306 C2H2 Transcription Factor Family AT3G18290 39.080 7.69e-55 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04480 K10144 - gmx:100803569 612.453