Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04463 ATGGATGCCAAGATAGACACAGCAGAAAAGAAGGTGCTGGTTGGTATTGTAAAATTGGCACAACAAAAAGACATGAAGGGTAAACTGGGAGGCTGGAAAGAATTCTTGAACAATCATGATAAAAAATTTGGGGCATCTTTGAGTGATCCATCAAAGAGGTCCCATGAGGTTTTGGCTGAATTTCTCAAGACATTCTCAACTGATGAGGATTTAAAGTTTTTTTATAACATCTTGCCGTATTCTTCAAAACATGATTCCCCTGAGCAGTGTCTAGTCCAAGCAACTTGCCAGCACCCTCGGCACTCAAAGGATTATTCATTGCCATTTACTGACAAGGGATGGCTAGTGATAAACATTAAAAAGAAGTCCAAGGGGATAAGATCTACTACAATGTTTGCTGTTGATTGTGAAATGGTTCTTTGCGAAGATGGGACTGAAGCATTAGTCGAAGTTTGTGTTGTAGATCACAATTTAGAGGTCAAATTACACGAACTTGTTAAACCGGAGAAAGCAATCAAAGATTACAGAACAGAGATTACTGGTGTCTCTTCTAAAGATCTAGAGAATGTGACTCGCTCCTTAGCTGATATACAAAAATTGATGAAGAAGTGGTTATCCAGTGGAGCCATATTAGTGGGACACAGTTTGTATAATGATCTACGCGTGCTGAAGCTATATTATGATAGAGTGGTCGACACTGCATACATCTTCCAACCCATGGATGGAGCTACTCACAGGAGACCTTCTTTAAATAGTTTGTGTCAGGCAAGCCACGAAGTTCGGAAAAAGGGTGCTCCACATGATTGTCAAGATGATGCATGTGCAACAATGAAACTTGTTCTTGCAAAGATCAAACATGGCGTTGATAAGCCATTTCCGTTAACATTGGTTTCAGGAAGTGAGACGTCGAAGCTGCTTATTCACAGAATACCAACCACTGTGACCAGTGAAACACTACACGAAATTGTTCCTGGAGACTTCACACTAGAACAAAGGCCTGCAAAAAGTGGTAACATTGACATGTATTCTGCCATAGCTATCTTTAAGAGCCAACGAGAGGCACACGAGGCATATGAAGATATCCGAGGCAGCCAAAGAACGGATTCAAATGGGCTTCGCCAGAAACGCGTAAAATGTCAGCTGAGTACAGGTATAAATGTCAGTGTATTTGTTCGGAAAATGAGAATTGATAATCACCGTAAGAGAGATTTACAAGATGATACACTTGACACTTCCAAGAACAAGAAATTAAAAAAAGATTGCTCCGAAAGCTTTATCAGTGAAAGAAGACTCACTTGA 1299 0.4026 MDAKIDTAEKKVLVGIVKLAQQKDMKGKLGGWKEFLNNHDKKFGASLSDPSKRSHEVLAEFLKTFSTDEDLKFFYNILPYSSKHDSPEQCLVQATCQHPRHSKDYSLPFTDKGWLVINIKKKSKGIRSTTMFAVDCEMVLCEDGTEALVEVCVVDHNLEVKLHELVKPEKAIKDYRTEITGVSSKDLENVTRSLADIQKLMKKWLSSGAILVGHSLYNDLRVLKLYYDRVVDTAYIFQPMDGATHRRPSLNSLCQASHEVRKKGAPHDCQDDACATMKLVLAKIKHGVDKPFPLTLVSGSETSKLLIHRIPTTVTSETLHEIVPGDFTLEQRPAKSGNIDMYSAIAIFKSQREAHEAYEDIRGSQRTDSNGLRQKRVKCQLSTGINVSVFVRKMRIDNHRKRDLQDDTLDTSKNKKLKKDCSESFISERRLT 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04463 432 CDD REX1_like 132 281 IPR034922 -
Vifa3g04463 432 SUPERFAMILY Ribonuclease H-like 131 285 IPR012337 -
Vifa3g04463 432 Gene3D - 126 291 IPR036397 GO:0003676
Vifa3g04463 432 SMART exoiiiendus 130 289 IPR013520 -
Vifa3g04463 432 Pfam Exonuclease 133 279 IPR013520 -
Vifa3g04463 432 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 44 298 IPR047021 GO:0004527
Vifa3g04463 432 FunFam Small RNA degrading nuclease 3 126 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04463 Vifa-Chr3 1276951276 1276954504 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04463 127 295 C2H2 Transcription Factor Family AT3G27970 30.319 1.06e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04463 K14570 - gmx:100785565 528.48