Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04458 ATGTTCTCCAGCTCCCAATTCGATTCCTCCAACGCCTTCTCCGGCGGCGGTTTTACGTCCTCGCAACTCAATGAATCTTCTCCGGCACCGACTAAGAGCCGCGACTCTCAGGGTTTGGTTCCGGTTACAGTGAAGCAGATCAGTGAAGCTTCTCAATCTGGTGATGAGAAGTCCAATTTCGCAATCAACGGTGTGGATCTCACTAATGTGACCTTGGTTGGATTGGTGTATGAGAAAGCTGAGAGGAACACTGATGTTAATTTTGTTTTGGATGATGGAACTGGGCGAATCAAATGCCGAAGATGGGTCAATGAGAGTTTTGACACAAAGGAAATGGAGGAAGTATTGGATGGGATGTATGTTCGTGTTTATGGGAACTTGAAAAGCTTTCAAGGTGTAAGGCAGCTTGGAGCCTTCTCTGTCAGGCCTGTGACAAATTTTGATGAGATCCCTTTTCACTTTATTGACTGCATACATAACCACCTCCGTACCAAAGTTAAGTTGGAAGGAACCCCTTCTACATATCCTCCATCAAACTTGTCTATGAACACTCCTGTCAAAAGTGCATTGAATGGATCTCAGGCACCATCCAATCCGGGACATACACAATATAGCACTGATGGACTCAAGGATTGTGATAAATTAGTGATTGACTATCTGCAGCAGCATTCAAACATGTTAGATGAAAGGGGAATACATGTTGAAGAACTAGCAAAAGAGCTCAAGCTTCCCTTGGATAGGATCAAGTTGTCCGTAAAGGCTCTTGAAGATGATGGTCTTGTGTACTCCACCATAGACGACTCCCACTACAAATTAGCTTGA 822 0.4428 MFSSSQFDSSNAFSGGGFTSSQLNESSPAPTKSRDSQGLVPVTVKQISEASQSGDEKSNFAINGVDLTNVTLVGLVYEKAERNTDVNFVLDDGTGRIKCRRWVNESFDTKEMEEVLDGMYVRVYGNLKSFQGVRQLGAFSVRPVTNFDEIPFHFIDCIHNHLRTKVKLEGTPSTYPPSNLSMNTPVKSALNGSQAPSNPGHTQYSTDGLKDCDKLVIDYLQQHSNMLDERGIHVEELAKELKLPLDRIKLSVKALEDDGLVYSTIDDSHYKLA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04458 273 Gene3D - 31 165 IPR012340 -
Vifa3g04458 273 Pfam OB-fold nucleic acid binding domain 70 136 IPR004365 GO:0003676
Vifa3g04458 273 PIRSF RPA32 1 273 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vifa3g04458 273 SUPERFAMILY "Winged helix" DNA-binding domain 207 272 IPR036390 -
Vifa3g04458 273 MobiDBLite consensus disorder prediction 171 205 - -
Vifa3g04458 273 FunFam Replication protein A 32 kDa subunit 204 273 - -
Vifa3g04458 273 PANTHER REPLICATION PROTEIN A-RELATED 6 271 IPR040260 -
Vifa3g04458 273 MobiDBLite consensus disorder prediction 1 39 - -
Vifa3g04458 273 Pfam Replication protein A C terminal 187 267 IPR014892 -
Vifa3g04458 273 MobiDBLite consensus disorder prediction 170 205 - -
Vifa3g04458 273 SUPERFAMILY Nucleic acid-binding proteins 39 163 IPR012340 -
Vifa3g04458 273 FunFam replication protein A 32 kDa subunit A-like 32 166 - -
Vifa3g04458 273 Gene3D - 203 273 IPR036388 -
Vifa3g04458 273 CDD RPA2_DBD_D 69 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04458 Vifa-Chr3 1275140687 1275143060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04458 1 271 Core DNA Replication Machinery Family AT2G24490 50.000 4.78e-89 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04458 K10739 - gmx:100802512 424.091