Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04454 ATGTCAAAATTCACCCCCACTTCCTGCAATTCCTGCAACACAGAATCATTCACAGATGCTTCCCACCTTAAACTCCATTACCAATCCGACTGGCATCGCTACAATCTCAAACGCAAGGTGGCTGGTGTTCCTGGGGTGACAGAAGCTTTGTTTCTAGCTAGGCAATTGGCGCTCTCTCAAGTGAGAGATAAATCGAATGAAACCCCTATGCTCTACAGCTGTGGTTTATGTGGCAAGGGGTATAAGAGTGCTAAGGCTCATGCTGAGCATCTGAAGTCGAGAACTCATATGGTTCGGGCTTCGGAAGGAGCTAGTAATTCGGATGGGAAAGCTATAATTAAGCCACTTCCACCGCGTGTTGTGAATAGGCCGCCTCCTAGGAGATTGGTAAATGACTCTGCTGAAGATGAAGATGAAGACAGTGAGGATGAATGGGAGGAGGTTGATTCTGATGATGAACTGCTTGAGGATGCTGAGAAGTCGTTGACTGATTTGAACATGGATGAGAATGCTGAAAATGATGATATGGATGAAGATGATGTTGTGGATATAGATCCATCATGTTGCTTTATGTGTGATCACAAGCACAAAACAATAGAAAACTGTATGGTTCATATGCACAAGCACCATGGATTCTTCATTCCTGATGTTGAGTATTTGAAAGATCCAAAAGGGCTCCTCACTTATCTTGGTTTAAAAGTCAAAAGGGACTACTTGTGTCTGTACTGTAACGATAGGTGTCATCCTTTCAGCAGCTTGGAAGCAGTCAGGAAACATATGGTAGCAAAAAATCACTGTAAAGTGCATTATGGTGATGATGATGAGGAGGAGGAAGTAGAGCTGGAAGAATTCTATGATTATACCAGCAGTTATGTTGATGATCAAGGGAAGCAGCTAGTTGCATCCGGTGATGCTGATAATAATATAGAACTTAGTGGTGGGTCTGAGCTCGTAATCACTAAGATGTCTGGTGATAGAAAATCAACCAGAACTCTTGGTTCCCGTGAATATTTGCGTTATTATCGTCAGAAACCAAGGCCATCTCCAGCTAACAACATTGCCATTACTGCTGAATTGGCTTCAAGGTATAGGAGCATGGGTTTGGCCACTGTCCAATCAAGGGAGCAACTTGTGAGAATGAAAGTGTTGAAGCAGATGAACAAATCTGGTGTGGAGCATATGCGAAGCAAGATAGGGATGAAGAGTAATGTCATCCGGAACTTGCCAAACAATGTCACATATTAG 1245 0.4305 MSKFTPTSCNSCNTESFTDASHLKLHYQSDWHRYNLKRKVAGVPGVTEALFLARQLALSQVRDKSNETPMLYSCGLCGKGYKSAKAHAEHLKSRTHMVRASEGASNSDGKAIIKPLPPRVVNRPPPRRLVNDSAEDEDEDSEDEWEEVDSDDELLEDAEKSLTDLNMDENAENDDMDEDDVVDIDPSCCFMCDHKHKTIENCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYLCLYCNDRCHPFSSLEAVRKHMVAKNHCKVHYGDDDEEEEVELEEFYDYTSSYVDDQGKQLVASGDADNNIELSGGSELVITKMSGDRKSTRTLGSREYLRYYRQKPRPSPANNIAITAELASRYRSMGLATVQSREQLVRMKVLKQMNKSGVEHMRSKIGMKSNVIRNLPNNVTY 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04454 414 PANTHER ZINC FINGER PROTEIN 622 5 412 IPR040025 -
Vifa3g04454 414 Pfam C2H2 type zinc-finger (2 copies) 189 290 IPR041661 -
Vifa3g04454 414 MobiDBLite consensus disorder prediction 135 154 - -
Vifa3g04454 414 MobiDBLite consensus disorder prediction 93 154 - -
Vifa3g04454 414 SMART c2h2final6 7 32 IPR013087 -
Vifa3g04454 414 SMART c2h2final6 72 96 IPR013087 -
Vifa3g04454 414 SMART c2h2final6 238 265 IPR013087 -
Vifa3g04454 414 ProSitePatterns Zinc finger C2H2 type domain signature. 74 96 IPR013087 -
Vifa3g04454 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 96 IPR013087 -
Vifa3g04454 414 SUPERFAMILY beta-beta-alpha zinc fingers 172 248 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04454 8 414 C2H2 Transcription Factor Family AT4G31420 62.560 4.64e-179 503