Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04453 ATGAGCACCATCAACCTTGAAGAAATAAGAAACGAGAATGTCAATTTGGAACGGATTCCGCTGGAGGAAGTGTTTGAGCAGCTGAAATGTTCGAGAGAAGGTCTTTCATCAGAGGAAGGATCCAACAGGCTTGAAGTCTTTGGACCTAACAAGCTAGAAGAGGTGATAGATAACAAGATTTTGAAGTTTCTGGGATTTATGTGGAACCCTTTGTCATGGGTTATGGAAGCTGCTGCTATCATGGCCATTGCTTTGGCTAATGGAGGTGGAAAGCCTCCAGATTGGCAAGATTTTGTTGGAATCATTGTTCTCTTGGTCATCAACTCTACTATCAGTTTCATCGAAGAAAATAACGCCGGTAACGCGGCCGCTGCTCTCATGGCTGGTTTAGCTCCCAAGGCCAAGGTACTAAGGGATGGTACATGGAGTGAACAAGATGCTGCAATTTTAGTACCAGGAGACATAATCAGCATCAAGTTAGGAGACATCATTCCAGCCGATGCGCGTCTTCTCGAGGGAGATCCTTTAAGTGTTGACCAATCTGCTTTGACAGGAGAATCTCTTCCTGTCACAAAGGGTGCAACTCAAGAAGTATTTTCAGGATCGACCGTTAAGAAGGGTGAGATCGAAGCGATTGTGTATGCAACTGGTGTACACACGTTTTTTGGTAAAGCGGCTCATTTGGTTGATAGTACTAATCAGGTTGGACATTTTCAGCAAGTGCTAACCGCTATAGGAAACTTCTGCATTTGTTCGATTGCGGTTGGAATAGTCATTGAACTTATTGTGATGTATCCGGTTCAACACCGCAAGTATAGAGACGGAATTGATAATCTTTTGGTGCTTTTGATCGGTGGAATTCCGATTGCAATGCCAACTGTTTTGTCTGTTACTATGGCTATTGGCTCTCATAAGCTTTCAGAGCAAGGTGCAATTACAAAGAGAATGACTGCTATTGAAGAAATGGCTGGAATGGATGTTCTATGCAGTGATAAAACAGGAACTCTCACTTTGAATAAACTTAGTGTGGATAAAAACTTGATTGAAGTGTTTGCTAGGGGAACCGATAAGGACACGGTGATACTTTTAGCCGCAAGAGCTTCTAGGATAGAAAATCAGGATGCTATAGATGCTGCTATTGTTGGAATGCTGTCTGATCCACAAGAGGCTAGAGCTGGTATCAATGAGGTCCATTTTCTGCCGTTCAATCCCGTTGATAAGAGGACTGCTCTTACTTATATTGATTCTGATGGAAATTGGCATAGATCTAGCAAAGGTGCTCCCGAGCAGATATTGGATCTTTGCAACTGCAAAGAGAATGTGAGGAAAAGTGTTCATGCAATGATTGACAAGTTTGCCGAGCGTGGACTTCGATCTTTAGGTGTTGCTTGTCAGGAAGTACCCGAGAGAACAAAAGAGAGTCCTGGTGCACCATGGCAATTTGTTGGTTTGTTGCCACTATTTGATCCTCCTAGACATGATAGTGCTGACACAATTCGCGAGGCTCTTAATCTTGGTGTGAATGTTAAGATGATCACAGGGGACCAGCTTGCCATTGGAAAGGAAACAGGTAGAAGGCTTGGAATGGGAACAAACATGTATCCATCATCTGCATTGCTTGGTCAAGACAAAGCTTCGACTTCAGATATTCCTATTGACGAGTTGATTGAAAAGGCCGATGGATTTGCAGGAGTATTTCCCGAACACAAATATGAAATTGTCAAGAGGCTGCAAGATAGGAAGCATATATGTGGAATGACAGGAGATGGCGTAAACGATGCTCCTGCGTTAAAGAGAGCTGATATCGGAATTGCTGTTGCGGATGCTACAGATGCTGCTCGAAGTGCTTCTGATATTGTCCTTACTGAACCTGGTTTGAGTGTCATAATTAGTGCTGTGCTCACCAGCAGGGCCATTTTCCAGAGAATGAAGAATTATACCATTTATGCTGTGTCAATCACCATCCGTATCGTGTTCGGTTTCATGTTCATTGCTTTGATTTGGAAATTCGATTTTGCACCTTTCATGGTTTTGATCATTGCAATACTGAATGATGGTACCATTATGACAATTTCAAAAGATAGAGTGAAAGCATCTCCATTGCCTGACAGTTGGAAACTAAAGGAAATATTTGCAACTGGTATTGTTCTCGGCAGTTACATGGCACTAACAACTGTCATATTTTTCTGGGTGATGCATGATACCGACTTTTTCTCGGACAAGTTTGGTGTGAGGCCTTTGAGACATAGTCCTAATGAGATGATGGCAGCTCTATATCTACAAGTTAGTATAATAAGTCAGGCACTAATTTTCGTAACTAGGTCTCGAAGATGGTCTTTCGTCGAAAGACCTGGTTTACTCCTACTATTTGCTTTCCTCTTGGCTCAACTGATTGCAACTATTGTAGCAGTGTATGCTGATTGGAAATTTGCAAGAATAAATGGAATGGGATGGGGTTGGGCCGGCGTAATTTGGTTGTATAGTTTGGTAACCTATATTCCTCTTGATTTACTCAAGTTCGCAATCCGATATATTCTAAGTGGAAAGGCGTGGAATAATGTTTTCGAAAGCAGGATTGCTTTTACTACAAAGAAAGACTATGGCAGAGAAGAAAGGGAAGCACAATGGGCATCGGCGCAAAGATCACTTCATGGTCTTCGGTCTGCGGCTGTCTCAAACCTTTTGAATGAAAAAACTAGCTATAGAGAGCTCTCAGAGATAGCGGAACAAGCCAGGAGACGCGCTGAAGTTGCCAGGATTATGGAACAGAATACTCTGAAAGAAAGCGTTGAGTCTGTGGCGAAGCTTAAGGGACTTCACCTTGATACAACTAAGCAGAATTATACCATTTAA 2853 0.4241 MSTINLEEIRNENVNLERIPLEEVFEQLKCSREGLSSEEGSNRLEVFGPNKLEEVIDNKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIIVLLVINSTISFIEENNAGNAAAALMAGLAPKAKVLRDGTWSEQDAAILVPGDIISIKLGDIIPADARLLEGDPLSVDQSALTGESLPVTKGATQEVFSGSTVKKGEIEAIVYATGVHTFFGKAAHLVDSTNQVGHFQQVLTAIGNFCICSIAVGIVIELIVMYPVQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFARGTDKDTVILLAARASRIENQDAIDAAIVGMLSDPQEARAGINEVHFLPFNPVDKRTALTYIDSDGNWHRSSKGAPEQILDLCNCKENVRKSVHAMIDKFAERGLRSLGVACQEVPERTKESPGAPWQFVGLLPLFDPPRHDSADTIREALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKASTSDIPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKASPLPDSWKLKEIFATGIVLGSYMALTTVIFFWVMHDTDFFSDKFGVRPLRHSPNEMMAALYLQVSIISQALIFVTRSRRWSFVERPGLLLLFAFLLAQLIATIVAVYADWKFARINGMGWGWAGVIWLYSLVTYIPLDLLKFAIRYILSGKAWNNVFESRIAFTTKKDYGREEREAQWASAQRSLHGLRSAAVSNLLNEKTSYRELSEIAEQARRRAEVARIMEQNTLKESVESVAKLKGLHLDTTKQNYTI 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04453 950 FunFam Plasma membrane ATPase 481 635 - -
Vifa3g04453 950 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Vifa3g04453 950 Gene3D - 899 950 - -
Vifa3g04453 950 CDD P-type_ATPase_H 34 840 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vifa3g04453 950 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Vifa3g04453 950 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Vifa3g04453 950 PRINTS P-type cation-transporting ATPase superfamily signature 587 606 - -
Vifa3g04453 950 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Vifa3g04453 950 PRINTS P-type cation-transporting ATPase superfamily signature 610 622 - -
Vifa3g04453 950 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Vifa3g04453 950 Pfam E1-E2 ATPase 131 308 - -
Vifa3g04453 950 NCBIfam HAD-IC family P-type ATPase 101 359 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa3g04453 950 NCBIfam HAD-IC family P-type ATPase 562 677 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa3g04453 950 FunFam ATPase 4 plasma membrane-type 572 814 - -
Vifa3g04453 950 SFLD p-type atpase 311 638 IPR044492 -
Vifa3g04453 950 PANTHER CALCIUM-TRANSPORTING ATPASE 17 881 - -
Vifa3g04453 950 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 846 IPR023298 -
Vifa3g04453 950 FunFam Plasma membrane ATPase 132 216 - -
Vifa3g04453 950 Pfam haloacid dehalogenase-like hydrolase 325 601 - -
Vifa3g04453 950 PRINTS H+-transporting ATPase (proton pump) signature 587 603 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa3g04453 950 PRINTS H+-transporting ATPase (proton pump) signature 559 575 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa3g04453 950 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa3g04453 950 PRINTS H+-transporting ATPase (proton pump) signature 618 643 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa3g04453 950 PRINTS H+-transporting ATPase (proton pump) signature 759 780 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa3g04453 950 Gene3D - 341 488 IPR023299 GO:0000166
Vifa3g04453 950 Gene3D - 326 624 IPR023214 -
Vifa3g04453 950 SUPERFAMILY HAD-like 325 634 IPR036412 -
Vifa3g04453 950 Gene3D - 94 814 - -
Vifa3g04453 950 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Vifa3g04453 950 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Vifa3g04453 950 NCBIfam plasma-membrane proton-efflux P-type ATPase 34 805 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vifa3g04453 950 SFLD C1.7: P-type atpase like 311 638 - -
Vifa3g04453 950 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Vifa3g04453 950 FunFam Plasma membrane ATPase 341 488 - -
Vifa3g04453 950 Gene3D - 132 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04453 Vifa-Chr3 1274352024 1274357014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04453 4 950 Primary Pumps ATPases AT2G07560 79.725 0.0 1560
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04453 3 1274352024 1274357014 Vifa3g04453 3 1274352024 1274357014 ECH
Vifa3g04453 3 1274352024 1274357014 Vifa2g04122 2 1203727215 1203733093 PCT