Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04449 ATGGAAGGAAACTACCGCAGGCCCATCGTTCGAAAGAGCATGTTATCAAAAAGAGGCATTGATGGGACGGAAGTCCCTAAAAAAAGGACGGGCGTTGTGTTTAGAGAGACTGCTAATACCAGAGATGGTCAAAATCGAAGCCGAGCAGGTTGCAGTAGTGGAGCCAACCCTCCTGTTCAAAAAAGATCTTCTGAAGCTGTTAAAATTTTAAGGCCATCAACGCAGTCATCTTCAAGTAAAAAGGAGGTAGTTGGTAGTTCCCGTAGAACATCTGCTAACCTGGTGAAACCACTTATAGAGCCTCGGAGAACGTTATCTTCGAGTGGTCTTCCAGCTGAAGAGAAAGGTAGAGAGTCTACTAATGTGATTCGGGCAGGAGTAGGAAAATCAGGTGCTGTTGCAGTATCAAATTTAAGATCTCAAAAGAATTTTAATCAAAGACCCGGGTTGCATCAACGAGAAACTGAAAGCATTGGTCCGGTGACACAAGCAGTTTCTAGCAAGTATGGATTGAGGAACCTCAGATGCAACACTCTATCTGATGTGATCCCTTCTTCATGCTCGTCATCAAATTCTACCTTTAATAGAAGGAAGACTACTGTGACAAAAACGAGAAGCTCTGAAGGGGAAAGTAGCTCCACTCTTAAAGGGAAGAAGATGACTGCTTCTTCATCGGAAAGATTGAATTCTAGCTCCAGAAATGGAAGAACTAGTTCTGATACAAGAGGGTCTAGAAATATTCCTCCTCTGAGGGACAATAGTAGAGCATCAGTTAGAACTGAAAAAACGGTTAGTGGTTATGCCAGGGGAAGATTTTCTAACCAAGGAAATGAAAACTCCAAAGAAAACAATGGGGACAATAGCCGAGCATCAGCTAAAACTGAAAGAACGGTTAGTGGTTATGCCGGGGGACGATTTTCTAACCAAGGAAATGAAAACTCCAAAGAGAACAATGGGGACGATAGCAGAGCATCAGTTAAAACTGAAAAAACGGTTAGTGGTTATGGCAGGGGAAGATTTTCTAAACAAGGAAATGAAAACTCTAAAGAAAAAGAGTCCCGTGATGCATTGCCTATTTCTCCTCATTCTGTTGATCTTAACTCTTCTGTCACTGAGGAGATTTGCGGTGGTATGCCTATGTCTCCTGAAGAACACGATACCTGTCATTCTCTAATAATTCAGGATGGCTTTCGGCGCTACAGTATGGATGGTATTTCAGAGGTATTATTGGCACTCGAGAGAATGGAACAAAATGAAGAGTTAACCCATGAGCAAATTGATTTACTAGAGACCAACTCTATTCTTGATGGACTTAGCTTCTGTGATACTCATAGAGACATGAGGCTGGATATTGATGACATGTCGTACGAGGAACTCTTAGCTCTCGAAGAGAGAATGGGTACAGTTAGTACAGCACTGTCAGAGGAAGCACTCTCTGATAGTCTTAAAATAAGTGTCTTTGAGTCTACGCCTTCAGATGATGCAGCCGACTGTGTTGATGAGGATAACAATGAAATCAAATGCTGCATTTGCCAGGAGGAATATGTTGTTGGAGATGAAATTGGAAGACTGCAATGCACGCATAAATATCATGTTGATTGTATACAGGAATGGTTGAGGCTGAAGAATTGGTGCCCTATGTGCAAAGAGTCAGCGGCACTGTTTAACTCGTCGTCGTCATCATCTCATTAG 1692 0.4226 MEGNYRRPIVRKSMLSKRGIDGTEVPKKRTGVVFRETANTRDGQNRSRAGCSSGANPPVQKRSSEAVKILRPSTQSSSSKKEVVGSSRRTSANLVKPLIEPRRTLSSSGLPAEEKGRESTNVIRAGVGKSGAVAVSNLRSQKNFNQRPGLHQRETESIGPVTQAVSSKYGLRNLRCNTLSDVIPSSCSSSNSTFNRRKTTVTKTRSSEGESSSTLKGKKMTASSSERLNSSSRNGRTSSDTRGSRNIPPLRDNSRASVRTEKTVSGYARGRFSNQGNENSKENNGDNSRASAKTERTVSGYAGGRFSNQGNENSKENNGDDSRASVKTEKTVSGYGRGRFSKQGNENSKEKESRDALPISPHSVDLNSSVTEEICGGMPMSPEEHDTCHSLIIQDGFRRYSMDGISEVLLALERMEQNEELTHEQIDLLETNSILDGLSFCDTHRDMRLDIDDMSYEELLALEERMGTVSTALSEEALSDSLKISVFESTPSDDAADCVDEDNNEIKCCICQEEYVVGDEIGRLQCTHKYHVDCIQEWLRLKNWCPMCKESAALFNSSSSSSH 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04449 563 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 76 553 IPR045191 GO:0061630
Vifa3g04449 563 MobiDBLite consensus disorder prediction 185 253 - -
Vifa3g04449 563 MobiDBLite consensus disorder prediction 37 60 - -
Vifa3g04449 563 ProSiteProfiles Zinc finger RING-type profile. 508 549 IPR001841 -
Vifa3g04449 563 MobiDBLite consensus disorder prediction 17 35 - -
Vifa3g04449 563 MobiDBLite consensus disorder prediction 185 367 - -
Vifa3g04449 563 MobiDBLite consensus disorder prediction 67 93 - -
Vifa3g04449 563 Pfam Ring finger domain 507 549 IPR001841 -
Vifa3g04449 563 FunFam E3 ubiquitin-protein ligase arkadia 470 554 - -
Vifa3g04449 563 MobiDBLite consensus disorder prediction 343 358 - -
Vifa3g04449 563 MobiDBLite consensus disorder prediction 267 315 - -
Vifa3g04449 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 469 553 IPR013083 -
Vifa3g04449 563 SMART ring_2 508 548 IPR001841 -
Vifa3g04449 563 SUPERFAMILY RING/U-box 503 552 - -
Vifa3g04449 563 Coils Coil 412 432 - -
Vifa3g04449 563 MobiDBLite consensus disorder prediction 17 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04449 Vifa-Chr3 1272970788 1272973103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04449 405 552 C3H Transcription Factor Family AT2G15530 45.638 6.27e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04449 - - psat:127092625 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04449 3 1272970788 1272973103 Vifa3g04449 3 1272970788 1272973103 ECH