Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04432 ATGGCAGTGGAACTCATGGGGTTCCCAAAACTAGATGAACAAAAAGCCATCCAAGAGGCTGCATCAGAAGGTCTCAAAGGCATGGAACACCTGATCCTAACCCTTTCTCATCAACCTACTCAATTAAACACTCAACTCACCGACCTCACCGTCTCCAAGTTCAAAAAACTCATCTCTTTACTCAACCGAACCGGTCACGCCCGGTTCAGACGAGCCCCGGTTCAACTTCAACCCACACTTTCTTCATCTTCTCTTCCTCCTCCTCCTCCTCCTCAACCTCAACCGCAAACATCAATCCCAAAGCAGTTTCCTTCTCCCTCACCGCCACTTGCACCCACACCAATTTCCATCCGTCACGCGCCCTCCACCTTTCCCCAACCGCAACACCACAGCCTCACGCTCGATTTCACAAAACCAAACGACGTCGTTTTAAGCTCAAACGCGAAAAACTCCGTCGTCGAACTTGAATTCTCGAAAGATACAGCCACGTTCAGCGTCTCTTCAACTTCCTCTTTCATGTCATCCGCCATCACCGGCGACGGTAGCGTCAACGGCAAACAGGGATCCTCGATCTTCCTCAATCCAGCAGCAACACCAGCTCTCTCCGGGGGAAAACCGCCTCTCTCATCAGCTCCATCCAAAAAAAGGTGCCACGATCACGGCGAACACTCCGACGATGTTTCCGGCTCAAACAAGTGCCACTGTGTCAAACGAAGGAAAAATAGGGTGAAGAGGACTGTGAGAGTACCGGCGATAAGTTCAAAGACAGCCGATATACCGCCAGACGAGTACTCGTGGCGGAAATATGGTCAGAAACCGATTAAGGGTTCACCGTATCCAAGAGGCTATTACAAGTGTAGTACAGTGAGAGGGTGCCCGGCGAGGAAACACGTGGAGCGTGCACCGGATGATCCAACGATGCTGATTGTAACGTACGAGGGGGAGCACAGACACGCGATTCAAGCCGCGATGCAGGAGAACGCTGCCGGGATTGTGGGTTTGGTATTCGAGTCAACGTAA 1020 0.5167 MAVELMGFPKLDEQKAIQEAASEGLKGMEHLILTLSHQPTQLNTQLTDLTVSKFKKLISLLNRTGHARFRRAPVQLQPTLSSSSLPPPPPPQPQPQTSIPKQFPSPSPPLAPTPISIRHAPSTFPQPQHHSLTLDFTKPNDVVLSSNAKNSVVELEFSKDTATFSVSSTSSFMSSAITGDGSVNGKQGSSIFLNPAATPALSGGKPPLSSAPSKKRCHDHGEHSDDVSGSNKCHCVKRRKNRVKRTVRVPAISSKTADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPTMLIVTYEGEHRHAIQAAMQENAAGIVGLVFEST 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04432 339 Pfam WRKY DNA -binding domain 262 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g04432 339 Gene3D WRKY domain 243 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa3g04432 339 MobiDBLite consensus disorder prediction 212 232 - -
Vifa3g04432 339 SUPERFAMILY WRKY DNA-binding domain 256 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa3g04432 339 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 324 IPR044810 GO:0003700
Vifa3g04432 339 ProSiteProfiles WRKY domain profile. 255 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g04432 339 MobiDBLite consensus disorder prediction 78 133 - -
Vifa3g04432 339 MobiDBLite consensus disorder prediction 82 115 - -
Vifa3g04432 339 SMART WRKY_cls 260 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g04432 339 MobiDBLite consensus disorder prediction 119 133 - -
Vifa3g04432 339 MobiDBLite consensus disorder prediction 194 232 - -
Vifa3g04432 339 FunFam WRKY transcription factor 65 244 321 - -
Vifa3g04432 339 Pfam Plant zinc cluster domain 214 258 IPR018872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04432 Vifa-Chr3 1269236351 1269237891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04432 1 338 WRKY Transcription Factor Family AT2G24570 57.759 1.35e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa3g04432 WRKY 9.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04432 - - tpra:123902288 540.421