Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04422 ATGTTACAGATTGATATTTTACTCTGCACTGATTGCTTCCATGATGGGAAATTTGTCGCCGGTCATTCAAGTATAGATTTTATAAGGGTGGATTCAACAAGAGATTACGGTGAACTAGATGGGGAAAGTTGGACTGATCAAGAAACTTTGTTGCTGCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCCGAGCATGTTGGTACCAAGTCAAAAGCACAATGTATTCTTCATTTTCTTCGTATGCCCATGGAAGATGGGAAATTGGAAAATATCAATGTTCCAAGCATGTCTTTGTCATCCAGTGCGATGAATAGAGATGATAATGGAAGATCGCATCATTACTCGAATGGAGATTCTGCAGGACCTGCCCATCAAATCAGAGATTCTGACAACCGCCTGCCTTTTGCTAATTCTGGAAATCCTGTTATGGCTCTGGTTGCCTTTTTAGCCTCTGCGGTTGGACCAAGAGTAGCGGCCTCATGTGCTCATGCAGCATTATCAGTGTTGTCAGGGGATAATACTGGCTCCCAGACGGAGGCATCAGGGCATGATAATAGGACAAATCCAGAAAACATGCATTGTAGGGATGGTGGCTCTCGAGGAGAAGCTGCAATTTCAAATAATCATAATGAGGAAAAGGCAAAAGCAATTAGTTCGCGGGATCAAAATGAGGGTAGGACCACCCCACTCTCTGCTGAAAAAGTTAATGAAGCAGCTAAAGCAGGCCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCCGATCACGAAGAACGAGAAATTCAGAGATTATGTGCTAATATAATTAATCATCAGTTGAAAAGATTGGAATTGAAGCTGAAACAGTTTGCAGAAATCGAAACATTGTTGATGAAGGAATGCGAACAAGTGGAAAGGGCAAAACAGAGGTTTGCTGCTGAACGCACCCGTGTTATATCAGCACGTTTTGGAACTGCAGGAACTACGCCTGCAATGAATGCATCTGGTGTTGGTCCTAACAATTAA 1017 0.4218 MLQIDILLCTDCFHDGKFVAGHSSIDFIRVDSTRDYGELDGESWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRMPMEDGKLENINVPSMSLSSSAMNRDDNGRSHHYSNGDSAGPAHQIRDSDNRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALSVLSGDNTGSQTEASGHDNRTNPENMHCRDGGSRGEAAISNNHNEEKAKAISSRDQNEGRTTPLSAEKVNEAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFAAERTRVISARFGTAGTTPAMNASGVGPNN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04422 338 SUPERFAMILY Homeodomain-like 41 94 IPR009057 -
Vifa3g04422 338 MobiDBLite consensus disorder prediction 102 136 - -
Vifa3g04422 338 CDD SANT 43 85 IPR001005 -
Vifa3g04422 338 Pfam SWIRM-associated region 1 245 321 IPR032451 -
Vifa3g04422 338 MobiDBLite consensus disorder prediction 210 224 - -
Vifa3g04422 338 FunFam SWI/SNF complex subunit SMARCC2 isoform C 40 90 - -
Vifa3g04422 338 ProSiteProfiles SANT domain profile. 39 90 IPR017884 -
Vifa3g04422 338 PANTHER SWI/SNF COMPLEX-RELATED 41 315 - -
Vifa3g04422 338 SMART sant 40 88 IPR001005 -
Vifa3g04422 338 Gene3D - 40 90 - -
Vifa3g04422 338 ProSiteProfiles Myb-like domain profile. 43 86 IPR001005 -
Vifa3g04422 338 Pfam Myb-like DNA-binding domain 43 84 IPR001005 -
Vifa3g04422 338 MobiDBLite consensus disorder prediction 175 189 - -
Vifa3g04422 338 MobiDBLite consensus disorder prediction 175 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04422 Vifa-Chr3 1266292770 1266294703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04422 4 82 EF-hand Containing Proteins AT3G07740 34.483 4.08e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa3g04422 SWIRM-assoc_1 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04422 K11649 - gmx:100780440 569.696