Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04421 ATGTGGTTACAAAAGAATCAATGGGACAAGAAGGATGGGGTGAATGGAATAGTGGCAGTGGCAATAGATACAGATAAAGGAAGCCAAAATGCACTCAAATGGGCCATTGATCATCTTGTCACAAAAGGCTCAACTATTGTTCTCATCCATGTCAATGCTAAAACATCATCTTCTATTTCAACCCCGAGGTCAGGGATGAATGATCAGGTTTTAGTGGTGTCCAAAGATATTGATGAACATACCAGACAAATTTTTAATCCATATCGCGTCTTCTGCGCGCGAAAAGATATACACTGCAGGGACATTGTTCTAGAACATGGAGATGTATCCAAAGCTTTGATTGAATATACTTCTCAAACTGCAGTTGAGCATTTGGTTATAGGCTCATCCAACAAAAATGGTTTTCTCAAAAGATTCAAGGTAGCGGACATTCCAGGAACGGTATCGAAAGGTGCACCCGATTTTTGTACCGTATATGTTGTTTCTAAGGGAAAAATCCAATCCATGAGATCTGCTTCTAGAGCTGCTCCTGCATTTTCAGCTCTACAATCTCAACTTAGTCAATCAAATGCAAGGTCAGATACACCTGACCCTCGTATACCGACAGCGGCTAAAGCACCCGAGAGGATGTCATTTGAAGGACATCCTCGTGGATCGCAAGATGGCACGACCGATTCATTCAGGTCGCCATTTACGAGGAAACGCCCGAATGATAAGTCGTATGGAGAACTTCATATGCCAGATAGTGACATATCTTTTGTAAGCTCGGGACGACCAAGTACAGATCGTCTATTCCCTTCGATATATAACCAAAACTACAATTCGGAGTCAAGTTTTTCAAATCCTAGGCTATCATATAGTTCTGATACTGATGGAAACTATAGCTTTGAATCAATGAATTATGGAAGGAGATCTGTTGATATTGGCACTCCTGATTTCTCGTCTTTCTCGCATGATAGCGATGGACTGTCTTCTTCTGCGTCGCAAAATGTGGATGATGTGGAAGCTGAAATGAGGAGATTGAAATTGGAGTTAAAGCAAACAATGGAAATGTATAGCACAGCCTGTAAAGAAGCACTCACAGCACAGCAGAAGGCTGTTGAACTTCAAAGATGGAAATTAGAGGAAGAAAGGAGATTGGAGGAGGCAAGAATGGCTGAAGAAAATGCGTTGGCTGTTGCGGAAAAGGAAAAGGCGATATCCAAAGCAGCGATTGAGGCTGCTGAAGCACAGAGAAGGATTGCGGAACTTGAAGCACAAAAGAGAATTAAGGCAGAAATTAAAGCTCTACAAGAATCAGAAGAGAAAAGAAAAGTAGTTGATGCTATGACAAACAAAGATGTGAGGTACAGAAGGTATGCAATTGAAGAGATTGAAGCTGCGACGAATTTTTTCGCTGACTCTCTTAAGATTGGAGAAGGCGGTTATGGTCCAGTTTATAAATGTCTTCTGGACCATACGCCTGTCGCGGTTAAAGTTCTTCGTCCTGATGCACAACAAGGAAGGTCGCAATTTCAACGAGAAGTTGAGGTATTGAGTTGCATAAGGCATCCAAACATGGTTCTCCTCCTAGGAGCCTGTCCGGAATACGGCTGCTTAGTTTACGAGCACATGGCAAACGGAAGTTTAGACGATTGTCTCTTTTGTAGAGGAAACACTATACCACTACCTTGGCAGCTAAGGTTCAAAATTGCAGCTGAAATAGGCACAGGCTTACTCTTCCTCCACCAAACGAAACCCGAGCCATTAGTCCATCGAGACCTCAAACCAGCAAACATCTTACTCGACCGCAACTACGTCTCAAAGATAAGCGACGTCGGTTTAGCAAGACTAGTTCCACCATCCGTAGCAGACAATGTGACGCAATACCGAATGACGTCGGCAGCAGGAACATTCTGTTACATAGATCCTGAGTACCAACAGACAGGAATGTTGGGAGTGAAGTCGGATATATACTCGCTCGGGATAATTTTTTTGCAGATTTTGACAGCGAGACCACCAATGGGATTGACACATCATGTTGGTAGAGCAATTGAGAAAGGCACATTTTCTGAGATGTTGGATCCAAGAGTGACAGATTGGCCAGTTGAAGAGGCAATGGGATTTGCTAAGTTGGCTATAAGATGTGCTGAGTTAAGGAGAAAAGATAGACCTGATCTTGGTAAAGAGGTTATGCCTGAATTAGATAGATTAAGAGAACTTGCTGAAAATAATGAGCCTCATTCATTTTTTAGTGGATTTAGAAGTCCTTCTACTCAGAGCCAAGTCTCTCTTCAAATGGATAGTTTAAGTTCCCCACTTCCTTATTCTGGGGATAGTGCAAGAAATACATCAAGTCCTCTTTGA 2346 0.4237 MWLQKNQWDKKDGVNGIVAVAIDTDKGSQNALKWAIDHLVTKGSTIVLIHVNAKTSSSISTPRSGMNDQVLVVSKDIDEHTRQIFNPYRVFCARKDIHCRDIVLEHGDVSKALIEYTSQTAVEHLVIGSSNKNGFLKRFKVADIPGTVSKGAPDFCTVYVVSKGKIQSMRSASRAAPAFSALQSQLSQSNARSDTPDPRIPTAAKAPERMSFEGHPRGSQDGTTDSFRSPFTRKRPNDKSYGELHMPDSDISFVSSGRPSTDRLFPSIYNQNYNSESSFSNPRLSYSSDTDGNYSFESMNYGRRSVDIGTPDFSSFSHDSDGLSSSASQNVDDVEAEMRRLKLELKQTMEMYSTACKEALTAQQKAVELQRWKLEEERRLEEARMAEENALAVAEKEKAISKAAIEAAEAQRRIAELEAQKRIKAEIKALQESEEKRKVVDAMTNKDVRYRRYAIEEIEAATNFFADSLKIGEGGYGPVYKCLLDHTPVAVKVLRPDAQQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEHMANGSLDDCLFCRGNTIPLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADNVTQYRMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTARPPMGLTHHVGRAIEKGTFSEMLDPRVTDWPVEEAMGFAKLAIRCAELRRKDRPDLGKEVMPELDRLRELAENNEPHSFFSGFRSPSTQSQVSLQMDSLSSPLPYSGDSARNTSSPL 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04421 781 Gene3D Phosphorylase Kinase; domain 1 442 537 - -
Vifa3g04421 781 Pfam Protein kinase domain 468 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04421 781 Coils Coil 324 351 - -
Vifa3g04421 781 ProSiteProfiles Protein kinase domain profile. 465 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04421 781 FunFam U-box domain-containing protein 51 538 738 - -
Vifa3g04421 781 SMART serkin_6 465 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04421 781 Gene3D HUPs 17 161 IPR014729 -
Vifa3g04421 781 Pfam Universal stress protein family 18 139 IPR006016 -
Vifa3g04421 781 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 437 537 - -
Vifa3g04421 781 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 139 - -
Vifa3g04421 781 ProSitePatterns Serine/Threonine protein kinases active-site signature. 583 595 IPR008271 GO:0004672|GO:0006468
Vifa3g04421 781 SUPERFAMILY Protein kinase-like (PK-like) 449 720 IPR011009 -
Vifa3g04421 781 PANTHER OS02G0152300 PROTEIN 18 745 - -
Vifa3g04421 781 Coils Coil 357 427 - -
Vifa3g04421 781 MobiDBLite consensus disorder prediction 742 781 - -
Vifa3g04421 781 Gene3D Transferase(Phosphotransferase) domain 1 538 745 - -
Vifa3g04421 781 MobiDBLite consensus disorder prediction 183 257 - -
Vifa3g04421 781 CDD STKc_IRAK 471 731 - -
Vifa3g04421 781 CDD STK_N 17 164 - -
Vifa3g04421 781 MobiDBLite consensus disorder prediction 231 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04421 Vifa-Chr3 1265989232 1265992598 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04421 1 758 Receptor kinase-like Gene Family AT1G78940 56.178 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa3g04421 Pkinase 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04421 - - gmx:100779981 1110.13