Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04420 ATGTGGTTACAAAAGAATCAATGGGACAAGAAGGATGGGGTGAATGGAATAGTGGCAGTGGCAATAGATACAGATAAAGGAAGCCAAAATGCACTCAAATGGGCCATTGATCATCTTGTCACAAAAGGCTCAACTATTGTTCTCATCCATGTCAATGCTAAAACATCATCTTCTATTTCAACCCCGAGGTCAGGGATGAATGATCAGGTTTTAGTGGTGTCCAAAGATATTGATGAACATACCAGACAAATTTTTAATCCATATCGCGTCTTCTGCGCGCGAAAAGATATACACTGCAGGGACATTGTTCTAGAACATGGAGATGTATCCAAAGCTTTGATTGAATATACTTCTCAAACTGCAGTTGAGCATTTGGTTATAGGCTCATCCAACAAAAATGGTTTTCTCAAATTCAAGGTAGCGGACATTCCAGGAACGGTATCGAAAGGTGCACCCGATTTTTGTACCGTATATGTTGTTTCTAAGGGAAAAATCCAATCCATGAGATCTGCTTCTAGAGCTGCTCCTGCATTTTCAGCTCTACAATCTCAACTTAGTCAATCAAATGCAAGGTCAGATACACCTGACCCTCGTATACCGACAGCGGCTAAAGCACCCGAGAGGATGTCATTTGAAGGACATCCTCGTGGATCGCAAGATGGCACGACCGATTCATTCAGGTCGCCATTTACGAGGAAACGCCCGAATGATAAGTCGTATGGAGAACTTCATATGCCAGATAGTGACATATCTTTTGTAAGCTCGGGACGACCAAGTACAGATCGTCTATTCCCTTCGATATATAACCAAAACTACAATTCGGAGTCAAGTTTTTCAAATCCTAGGCTATCATATAGTTCTGATACTGATGGAAACTATAGCTTTGAATCAATGAATTATGGAAGGAGATCTGTTGATATTGGCACTCCTGATTTCTCGTCTTTCTCGCATGATAGCGATGGACTGTCTTCTTCTGCGTCGCAAAATGTGGATGATGTGGAAGCTGAAATGAGGAGATTGAAATTGGAGTTAAAGCAAACAATGGAAATGTATAGCACAGCCTGTAAAGAAGCACTCACAGCACAGCAGAAGGCTGTTGAACTTCAAAGATGGAAATTAGAGGAAGAAAGGAGATTGGAGGAGGCAAGAATGGCTGAAGAAAATGCGTTGGCTGTTGCGGAAAAGGAAAAGGCGATATCCAAAGCAGCGATTGAGGCTGCTGAAGCACAGAGAAGGATTGCGGAACTTGAAGCACAAAAGAGAATTAAGGCAGAAATTAAAGCTCTACAAGAATCAGAAGAGAAAAGAAAAGTAGTTGATGCTATGACAAACAAAGATGTGAGGTACAGAAGGTATGCAATTGAAGAGATTGAAGCTGCGACGAATTTTTTCGCTGACTCTCTTAAGATTGGAGAAGGCGGTTATGGTCCAGTTTATAAATGTCTTCTGGACCATACGCCTGTCGCGGTTAAAGTTCTTCGTCCTGATGCACAACAAGGAAGGTCGCAATTTCAACGAGAAGTTGAGGTATTGAGTTGCATAAGGCATCCAAACATGGTTCTCCTCCTAGGAGCCTGTCCGGAATACGGCTGCTTAGTTTACGAGCACATGGCAAACGGAAGTTTAGACGATTGTCTCTTTTGTAGAGGAAACACTATACCACTACCTTGGCAGCTAAGGTTCAAAATTGCAGCTGAAATAGGCACAGGCTTACTCTTCCTCCACCAAACGAAACCCGAGCCATTAGTCCATCGAGACCTCAAACCAGCAAACATCTTACTCGACCGCAACTACGTCTCAAAGATAAGCGACGTCGGTTTAGCAAGACTAGTTCCACCATCCGTAGCAGACAATGTGACGCAATACCGAATGACGTCGGCAGCAGGAACATTCTGTTACATAGATCCTGAGTACCAACAGACAGGAATGTTGGGAGTGAAGTCGGATATATACTCGCTCGGGATAATTTTTTTGCAGATTTTGACAGCGAGACCACCAATGGGATTGACACATCATGTTGGTAGAGCAATTGAGAAAGGCACATTTTCTGAGATGTTGGATCCAAGAGTGACAGATTGGCCAGTTGAAGAGGCAATGGGATTTGCTAAGTTGGCTATAAGATGTGCTGAGTTAAGGAGAAAAGATAGACCTGATCTTGGTAAAGAGGTTATGCCTGAATTAGATAGATTAAGAGAACTTGCTGAAAATAATGAGCCTCATTCATTTTTTAGTGGATTTAGAAGTCCTTCTACTCAGAGCCAAGTCTCTCTTCAAATGGATAGTTTAAGTTCCCCACTTCCTTATTCTGGGGATAGTGCAAGAAATACATCAAGTCCTCTTTGA 2343 0.4238 MWLQKNQWDKKDGVNGIVAVAIDTDKGSQNALKWAIDHLVTKGSTIVLIHVNAKTSSSISTPRSGMNDQVLVVSKDIDEHTRQIFNPYRVFCARKDIHCRDIVLEHGDVSKALIEYTSQTAVEHLVIGSSNKNGFLKFKVADIPGTVSKGAPDFCTVYVVSKGKIQSMRSASRAAPAFSALQSQLSQSNARSDTPDPRIPTAAKAPERMSFEGHPRGSQDGTTDSFRSPFTRKRPNDKSYGELHMPDSDISFVSSGRPSTDRLFPSIYNQNYNSESSFSNPRLSYSSDTDGNYSFESMNYGRRSVDIGTPDFSSFSHDSDGLSSSASQNVDDVEAEMRRLKLELKQTMEMYSTACKEALTAQQKAVELQRWKLEEERRLEEARMAEENALAVAEKEKAISKAAIEAAEAQRRIAELEAQKRIKAEIKALQESEEKRKVVDAMTNKDVRYRRYAIEEIEAATNFFADSLKIGEGGYGPVYKCLLDHTPVAVKVLRPDAQQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEHMANGSLDDCLFCRGNTIPLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADNVTQYRMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTARPPMGLTHHVGRAIEKGTFSEMLDPRVTDWPVEEAMGFAKLAIRCAELRRKDRPDLGKEVMPELDRLRELAENNEPHSFFSGFRSPSTQSQVSLQMDSLSSPLPYSGDSARNTSSPL 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04420 780 Coils Coil 356 426 - -
Vifa3g04420 780 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 436 536 - -
Vifa3g04420 780 ProSiteProfiles Protein kinase domain profile. 464 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04420 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Vifa3g04420 780 CDD STK_N 17 163 - -
Vifa3g04420 780 CDD STKc_IRAK 470 730 - -
Vifa3g04420 780 Coils Coil 323 350 - -
Vifa3g04420 780 SMART serkin_6 464 727 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04420 780 PANTHER OS02G0152300 PROTEIN 18 744 - -
Vifa3g04420 780 MobiDBLite consensus disorder prediction 741 780 - -
Vifa3g04420 780 Gene3D HUPs 17 160 IPR014729 -
Vifa3g04420 780 SUPERFAMILY Protein kinase-like (PK-like) 448 719 IPR011009 -
Vifa3g04420 780 Gene3D Phosphorylase Kinase; domain 1 441 536 - -
Vifa3g04420 780 MobiDBLite consensus disorder prediction 230 244 - -
Vifa3g04420 780 Pfam Protein kinase domain 467 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04420 780 Gene3D Transferase(Phosphotransferase) domain 1 537 744 - -
Vifa3g04420 780 MobiDBLite consensus disorder prediction 182 249 - -
Vifa3g04420 780 FunFam U-box domain-containing protein 51 537 737 - -
Vifa3g04420 780 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 160 - -
Vifa3g04420 780 Pfam Universal stress protein family 18 152 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04420 Vifa-Chr3 1265989232 1265992598 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04420 1 757 Receptor kinase-like Gene Family AT1G78940 55.867 0.0 804
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa3g04420 Pkinase 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04420 - - gmx:100779981 1113.6