Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04419 ATGGCTCATAAAACACCATACTATTGCATTTTGACACTCTTTATGTTGTCTACTTATTTTGTGCCAATTTTTGGTGACACAAATGGTCAAATTTTGATAAGGTTCAAAAGCTTTTTGTCTAATAACAATGCTTTAAGCAATTGGGTTGATGAGTCTAATTTATGCAATTGGGCTGGTTTATTATGCACAAACAACAACTTTTATGGGTTGAGGTTAGAAAATATGGGACTTGGTGGGAAAATTGATGTAGACACATTGTTGGAATTGACAAATTTTGTTAGTTTTAGTGTCATGAATAATACATTTGAGGGTCCAATGCCTGAATTCAAAAAGCTTGTGAAGTTAAGGGGGTTGTTTTTGTCCAATAACAAATTTTCTGGTGAGATTTTAGTTAATGGTTTTGAGGGTATGGTGAATCTTAAAAGGGTATTTTTGGCAGGAAATGAGTTTAATGGTCATATTCCTTTTTCACTTACTTCTTTGACTAGACTTTTGGATTTGGACTTGCATGGTAATAGTTTTGGAGGTAATATACCTGAATTTCAACAGAACTTTTTCAGATTTTTTGATTTGTCCAACAATCAATTGGAGGGACAGATACCAATTAGCTTAAGCAATGAGCCCTTAACCTCATTTTCTGGCAATAAAGGCTTGTGTGGGAAACCTTTGAATCCATGCAACATTTCTCCAACCATATCTATTGTGCATCCCAATTCACCTCCTTCAACTCAAGGAAATAGAAACAAACACAAAAAATTCCTTAGATTGTTAATCATAGTTTTGGCTATTGTTGTTTTAGCTTCAATAGTAGCACTTTTCTTTATCCAAACCCGCCGGCGACGACGAAGCGTAAAACAACTCAAACCGATATTAGGCCTACAACAAAACTCTCAAAAAACTCAAAGTTTCAAGGAGACACAATCCATTGATTTGACTGGTGATTTTAGTAAAGGTGAAAATGGAGAATTGAACTTTGTAAGGGAAGATAGAGGGAGTTTTGATTTGCAAGATCTTCTTAGGGCTTCAGCTGAAGTGCTTGGTAGTGGAAGCTTTGGATCAACTTATAAGGCCATGATTTTGAATGGACCAATTGTGGCTGTGAAGAGATTTAGGCACATGAACAATGTTGGAAAGAATGAGTTTTTTGAACACATGAAAAAGCTTGGAAGCTTGAATCATCCTAATCTACTTCCTCTTGTTGCATTCTACTACAAAAAAGAAGAGAAGTTTTTAGTTTATGATTTTGGTGAAAATCGTAGTTTGGCTAGTCATCTACACGGTAGAAACGGCATTGTACTAAACTGGTCGACTCGTCTAAAAATCATAAAAGGAGTAGCAAGAGGATTATCACATCTCTACAAAGAGTTTCCTAAACAAAACCTAGCACATGGTCATCTAAAATCCTCCAATGTGATCTTAAACAATTCATTTGTGCCACTTTTAACAGAATATGGACTTATACCTATGACAAACAAAAACCATGCACAACAATTCATGGCATCCTACAAATCACCAGAAGTGACACATTTTGATAGACCAAATGAAAAAACAGACATATGGTGTCTTGGAATCCTCATCTTAGAGCTACTAACAGGAAAGTTTCCATCAAATTATCTAAGACATGGAAAAGGCGGCGAGAGTTCGGATTTAGCAACATGGGTGAACTCAGTTGTGAGGGAAGAATGGACAGGTGAAGTGTTTGATAAGGATATAATTGGAACAAGAAATGGTGAAGGTGAGATGTTGAAGCTTTTGAGGATTGGAATGTTGTGTTGTGAATGGAGTGTTGAGAGGAGACTGGATTGGAAAGATGCTTTGGCTAAGATTGAAGAACTTAAGGAGAAAGATAGTGAAGATGAATCTTTTTCTTATGTTAGTGAAGGTGATTTGTATTCAAGAGGTGTCACTGATGATGATTTCTCTTTTTCTGTTGATAAGATTGGGAATGTGACTCAGTAG 1959 0.3599 MAHKTPYYCILTLFMLSTYFVPIFGDTNGQILIRFKSFLSNNNALSNWVDESNLCNWAGLLCTNNNFYGLRLENMGLGGKIDVDTLLELTNFVSFSVMNNTFEGPMPEFKKLVKLRGLFLSNNKFSGEILVNGFEGMVNLKRVFLAGNEFNGHIPFSLTSLTRLLDLDLHGNSFGGNIPEFQQNFFRFFDLSNNQLEGQIPISLSNEPLTSFSGNKGLCGKPLNPCNISPTISIVHPNSPPSTQGNRNKHKKFLRLLIIVLAIVVLASIVALFFIQTRRRRRSVKQLKPILGLQQNSQKTQSFKETQSIDLTGDFSKGENGELNFVREDRGSFDLQDLLRASAEVLGSGSFGSTYKAMILNGPIVAVKRFRHMNNVGKNEFFEHMKKLGSLNHPNLLPLVAFYYKKEEKFLVYDFGENRSLASHLHGRNGIVLNWSTRLKIIKGVARGLSHLYKEFPKQNLAHGHLKSSNVILNNSFVPLLTEYGLIPMTNKNHAQQFMASYKSPEVTHFDRPNEKTDIWCLGILILELLTGKFPSNYLRHGKGGESSDLATWVNSVVREEWTGEVFDKDIIGTRNGEGEMLKLLRIGMLCCEWSVERRLDWKDALAKIEELKEKDSEDESFSYVSEGDLYSRGVTDDDFSFSVDKIGNVTQ 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04419 652 Gene3D Ribonuclease Inhibitor 27 132 IPR032675 -
Vifa3g04419 652 Pfam Leucine rich repeat N-terminal domain 29 62 IPR013210 -
Vifa3g04419 652 ProSiteProfiles Protein kinase domain profile. 340 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04419 652 Gene3D Phosphorylase Kinase; domain 1 306 415 - -
Vifa3g04419 652 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 618 IPR046959 -
Vifa3g04419 652 Gene3D Transferase(Phosphotransferase) domain 1 417 632 - -
Vifa3g04419 652 Pfam Protein kinase domain 343 537 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04419 652 Gene3D Ribonuclease Inhibitor 133 230 IPR032675 -
Vifa3g04419 652 FunFam pollen receptor-like kinase 1 311 415 - -
Vifa3g04419 652 SUPERFAMILY L domain-like 42 223 - -
Vifa3g04419 652 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Vifa3g04419 652 SUPERFAMILY Protein kinase-like (PK-like) 344 613 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04419 Vifa-Chr3 1265334889 1265337481 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04419 1 642 Receptor kinase-like Gene Family AT4G31250 43.001 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa3g04419 Pkinase 2.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04419 - - tpra:123893577 1061.98