Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04411 ATGGATCAAAAGAAATGTAACAAAATAAGAGAAATTGTTAGACTTCAACAGATCCTTAAGAAATGGAGAAGAATAGCAAACTCATCAAAAACCACAACCACAACAACAACAACCTTAAACAACAACCTCACTAGAAGCAAAAGCATGAAGTTTCTGAAAAGAACACTTTCCTTGTCAGAACGAGAAGGAGGAACAACAACAACCTTAAACAATGGTTCGATTCCAAAAGGCTACTTAGCGGTTTGTGTTGGACAAGAGCTAAAGAGGTTTATCATACCAACAGAATATTTGAGTCATCAAGGTTTCATGATTCTTTTGAGACAAGCTGAAGAAGAATTTGGGTTTCAACAAGCTGGTGTCTTGAGATTTCCTTGTGAAGTTTCAGTTTTTGAGAGTGTTTTGAAGATGGTTGAAGATGGAAAGAAGAATGAGAAATTGTGTAATCAAGAATGTAGGTCAATTAGCATTGAAGAAATGATGGGTTATTGTTCTTTGGAAAATCAACTTGCTTGTTCTCATCATCCTCAAAGTCCATTGTGTAGATAG 546 0.3553 MDQKKCNKIREIVRLQQILKKWRRIANSSKTTTTTTTTLNNNLTRSKSMKFLKRTLSLSEREGGTTTTLNNGSIPKGYLAVCVGQELKRFIIPTEYLSHQGFMILLRQAEEEFGFQQAGVLRFPCEVSVFESVLKMVEDGKKNEKLCNQECRSISIEEMMGYCSLENQLACSHHPQSPLCR 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04411 181 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 50 133 IPR003676 GO:0009733
Vifa3g04411 181 Pfam Auxin responsive protein 48 137 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04411 Vifa-Chr3 1262856339 1262856884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04411 1 181 Calmodulin-binding Proteins AT4G31320 50.251 8.04e-59 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04411 K14488 - psat:127092634 317.39