Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04407 ATGGAACCAAAGTGGGGAACCATTCTAACGCCGTCCTCCATTTTCTCCGGCTTCGAAGATCTCAAGTGGATCACGGAGTTCGATCACGAACTCTTCACAAAGCGGCCAGTTACAGTTGAAACGGAAACCGATTCAGCGAACGACGTCGACGTGAAACCGTTTAAAGTGGATCCGTTCACCGGCGTCGGTGATGTTTGCTCCGGTATCGTCGCTGACGCCGCCGATTTTCATAATCTGGATACGGTAACTTCATTTTCAACTTGTGGTGAACCAACAAATAATACTTTTGTATCCTCCCAAAACCTCACTCCCAAGCATTCTACCATCACTGCAACTATTGATTCACAATCATCCATTTCTCCTACCGTTACGAGTCCAGTGTCAGCTAATAAACCAAGCAGTAGAGAAAATCAAACCAAAGGATTAACTACAACAAGTGGTTCTTCACGTGATCCATCTGATGTAGATGATGAAGCAGGTCCTTGTGAACAAAGCACAAACCCTATTGATATGAAGCGTCTTAGAAGGAAGGTGTCGAATCGCGATTCTGCTAGAAGGTCTAGAAGAAGAAAACAAGCACATTTGGCAGATCTGGAGGTTCAGGTTGAGCAACTGAGGCTGGAAAATTCAAGCCTATTTAAACAGCTTACAAATGCCAGTCAACAATTTCGTGATGCTAATACAAACAACCGAGTTCTAAAATCAGATGTTGAAGCTTTGAGGGCTAAGGTGAAGTTAGCAGAGGATATGGTCTCTAGGGGCACTCTCCCCACTTTTAACAACCAGCTTCTCCAAAATAATAATCAATTGAGCACCACTCCACCACAGATCAATAATGGTCTCCGCTGCATGGCGCATGTTTCGCCCACCATCACCGTCCATGGAAATGATGCTTCATTCGGGGTTACTGGACAGAATTCAGCTATTGGACTTGGAGACTTCCATATATCTTGCAGTGATTTCAATAATGGAGTTAATAATGATGCTGTGAGCTCTTTGACTAGCATATGGCAGTAA 1017 0.4405 MEPKWGTILTPSSIFSGFEDLKWITEFDHELFTKRPVTVETETDSANDVDVKPFKVDPFTGVGDVCSGIVADAADFHNLDTVTSFSTCGEPTNNTFVSSQNLTPKHSTITATIDSQSSISPTVTSPVSANKPSSRENQTKGLTTTSGSSRDPSDVDDEAGPCEQSTNPIDMKRLRRKVSNRDSARRSRRRKQAHLADLEVQVEQLRLENSSLFKQLTNASQQFRDANTNNRVLKSDVEALRAKVKLAEDMVSRGTLPTFNNQLLQNNNQLSTTPPQINNGLRCMAHVSPTITVHGNDASFGVTGQNSAIGLGDFHISCSDFNNGVNNDAVSSLTSIWQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04407 338 Coils Coil 188 250 - -
Vifa3g04407 338 MobiDBLite consensus disorder prediction 112 150 - -
Vifa3g04407 338 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 175 190 IPR004827 GO:0003700|GO:0006355
Vifa3g04407 338 Gene3D - 171 227 - -
Vifa3g04407 338 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 170 233 IPR004827 GO:0003700|GO:0006355
Vifa3g04407 338 Pfam bZIP transcription factor 171 222 IPR004827 GO:0003700|GO:0006355
Vifa3g04407 338 FunFam BZIP transcription factor 170 221 - -
Vifa3g04407 338 MobiDBLite consensus disorder prediction 112 193 - -
Vifa3g04407 338 SMART brlzneu 168 232 IPR004827 GO:0003700|GO:0006355
Vifa3g04407 338 CDD bZIP_plant_GBF1 190 224 IPR045314 GO:0003700|GO:0006355
Vifa3g04407 338 PANTHER BASIC LEUCINE ZIPPER 63 93 300 - -
Vifa3g04407 338 SUPERFAMILY Leucine zipper domain 172 222 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04407 Vifa-Chr3 1260200123 1260204581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04407 114 337 bZIP Transcription Factor Family AT5G24800 50.215 9.24e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa3g04407 bZIP_1 3.3e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04407 K25784 - gmx:100776831 350.132