Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04405 ATGCCTCGTGGAACTCTTGAAGTGATTCTCATTGGAGCAAAAGGCCTTCATGACACTGATTTTTTCACAGAGAAAATGGATCCCTATGTGATTCTGACTTATAAAACTCAGGAGCACATAAGCAGTGTAGCCAAAAATGCAGGATCTAATCCTCGATGGAATGAAAGCTTTCTTTTCACAGTTGCTGACAATGTTGCTGAACTTAATTTGAGGTTAATGGATAAAGATAAATTTACTAGAGATGATTTTCTTGGTGAGGCTATAATTCATTTGGGACCAGTTCTTGAGGAATATAGTGTGCCAGAAACTTCTTATAATGTTGTGAAGAATCAGAATTACTGTGGAGAAGTTCGTTTGGCTCTCACTTTCCATCCAGAGGGTGGGTTTTACTGA 393 0.3842 MPRGTLEVILIGAKGLHDTDFFTEKMDPYVILTYKTQEHISSVAKNAGSNPRWNESFLFTVADNVAELNLRLMDKDKFTRDDFLGEAIIHLGPVLEEYSVPETSYNVVKNQNYCGEVRLALTFHPEGGFY 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04405 130 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Vifa3g04405 130 Pfam C2 domain 4 104 IPR000008 -
Vifa3g04405 130 Gene3D C2 domain 2 126 IPR035892 -
Vifa3g04405 130 PANTHER C2 DOMAIN-CONTAINING 1 124 - -
Vifa3g04405 130 SMART C2_3c 5 103 IPR000008 -
Vifa3g04405 130 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 127 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04405 Vifa-Chr3 1259673402 1259674330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04405 4 95 C2H2 Transcription Factor Family AT4G21160 34.783 4.94e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04405 - - gmx:100814819 186.808