Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04404 ATGCCTCGTGGAACTCTTGAAGTGATTCTCATTGGAGCAAAAGGCCTTCATGACACTGATTTTTTCAAGAAAATGGATCCCTATGTGATTCTGACTTATAAAACTCAGGAGCACATAAGCAGTGTAGCCAAAAATGCAGGATCTAATCCTCGATGGAATGAAAGCTTTCTTTTCACAGTTGCTGACAATGTTGCTGAACTTAATTTGAGGTTAATGGATAAAGATAAATTTACTAGAGATGATTTTCTTGGTGAGGCTATAATTCATTTGGGACCAGTTCTTGAGGAATATAGTGTGCCAGAAACTTCTTATAATGTTGTGAAGAATCAGAATTACTGTGGAGAAGTTCGTTTGGCTCTCACTTTCCATCCAGAGGGTGGGTTTTACTGA 390 0.3821 MPRGTLEVILIGAKGLHDTDFFKKMDPYVILTYKTQEHISSVAKNAGSNPRWNESFLFTVADNVAELNLRLMDKDKFTRDDFLGEAIIHLGPVLEEYSVPETSYNVVKNQNYCGEVRLALTFHPEGGFY 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04404 129 SMART C2_3c 5 102 IPR000008 -
Vifa3g04404 129 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vifa3g04404 129 Pfam C2 domain 4 103 IPR000008 -
Vifa3g04404 129 PANTHER C2 DOMAIN-CONTAINING 1 123 - -
Vifa3g04404 129 Gene3D C2 domain 2 125 IPR035892 -
Vifa3g04404 129 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 126 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04404 Vifa-Chr3 1259673402 1259674330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04404 4 94 C2H2 Transcription Factor Family AT4G21160 35.165 6.25e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04404 - - gmx:100814819 191.43