Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04403 ATGGAAACAGAAGGAAATGGTGTGAAAGAGGAAACCCTACCTCCAGGGTTTCGATTTCATCCTACTGATGAAGAACTCATCACTTACTATCTTGTAAACAGGATTTCAGATTCTGATCATTTTACTTGCAAGGCAATAGGTGATGTAGATCTCAACAAATGCGAACCATGGGAGCTTCCAGGGAAGGCAAAGATGGGTACAAAAGAATGGTACTTCTTCAGTTTACGAGATCGTAAATATCCAACTGGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACTGGGAAAGACAAGGAAATATTCAACAGTGTTACATCAGAGTTGGTTGGCATGAAGAAGACTTTGGTTTTTTACAAAGGTAGGGCTCCTAGAGGAGAGAAAACTAATTGGGTCATGCATGAATACCGTATTCATTCTAAATCCACCTTCAGAAACAACAAGCAGGATGAGTGGGTGGTAAGCAGGGTATTCCGGAAGAGTGCAGGTGTAAAGAAGTACTACCCTTCTTTAAACCCTACAAGAGCAGTCATGAACAATCCTTACAATATTAATCTAGAAGTTGGTCCTAACAGCATGAACATGCCACCACCACCATCAATGATGCAGCTAGGGCTAGATTCTTCTGCTGCCGCTCATAATTTCCATCTCTATGGAAGAAACTACATCAACACTCCAGATCAGGTAGCTGAAGTCACTAGGCTTCTAAGAGCTGGTATTGTGCCAATGCATCAATATTCTCATTTGAACTTTCCAGTATCATCATCATCATCATCATCACCCTTAGATGCAGGAGGATTCACCATTTCAGGACTTAATTTGAATCTTGGAGGTGCAACTTCATCACAACAACCTATTTTGAGGCCAATGCCATCAACTACTACTACTACTACTACTCATCATATGGCAGCTCATCAACTGCATGATTTCAGTTCCAATAACATGATTAGTAATAATAATACTAATGTTGTTGGATATGGTGGTGGAGATCAAGTGAATAATTCAAACCCTAATGGTCATGGAAATAATAATAGGTACAATATGCAGGGTACTATTGACCATTGTGTGGATCTTGATAATTATTGGCCACCTTCTTACTGA 1110 0.3982 METEGNGVKEETLPPGFRFHPTDEELITYYLVNRISDSDHFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSTFRNNKQDEWVVSRVFRKSAGVKKYYPSLNPTRAVMNNPYNINLEVGPNSMNMPPPPSMMQLGLDSSAAAHNFHLYGRNYINTPDQVAEVTRLLRAGIVPMHQYSHLNFPVSSSSSSSPLDAGGFTISGLNLNLGGATSSQQPILRPMPSTTTTTTTHHMAAHQLHDFSSNNMISNNNTNVVGYGGGDQVNNSNPNGHGNNNRYNMQGTIDHCVDLDNYWPPSY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04403 369 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 297 - -
Vifa3g04403 369 FunFam NAC domain-containing protein 100-like 22 167 - -
Vifa3g04403 369 Pfam No apical meristem (NAM) protein 14 141 IPR003441 GO:0003677|GO:0006355
Vifa3g04403 369 SUPERFAMILY NAC domain 9 163 IPR036093 GO:0003677|GO:0006355
Vifa3g04403 369 Gene3D NAC domain 22 167 IPR036093 GO:0003677|GO:0006355
Vifa3g04403 369 ProSiteProfiles NAC domain profile. 13 163 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04403 Vifa-Chr3 1259627158 1259628789 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04403 9 366 NAC Transcription Factor Family AT2G24430 49.596 7.43e-105 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa3g04403 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04403 - - lja:Lj1g3v2035130.1 432.95