Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04402 ATGGAAACAGAAGGAAATGGTGTGAAAGAGGAAACCCTACCTCCAGGGTTTCGATTTCATCCTACTGATGAAGAACTCATCACTTACTATCTTGTAAACAGGATTTCAGATTCTGATCATTTTACTTGCAAGGCAATAGGTGATGTAGATCTCAACAAATGCGAACCATGGGAGCTTCCAGGGAAGGCAAAGATGGGTACAAAAGAATGGTACTTCTTCAGTTTACGAGATCGTAAATATCCAACTGGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACTGGGAAAGACAAGGAAATATTCAACAGTGTTACATCAGAGTTGGTTGGCATGAAGAAGACTTTGGTTTTTTACAAAGGTAGGGCTCCTAGAGGAGAGAAAACTAATTGGGTCATGCATGAATACCGTATTCATTCTAAATCCACCTTCAGAAACAACAAGGATGAGTGGGTGGTAAGCAGGGTATTCCGGAAGAGTGCAGGTGTAAAGAAGTACTACCCTTCTTTAAACCCTACAAGAGCAGTCATGAACAATCCTTACAATATTAATCTAGAAGTTGGTCCTAACAGCATGAACATGCCACCACCACCATCAATGATGCAGCTAGGGCTAGATTCTTCTGCTGCCGCTCATAATTTCCATCTCTATGGAAGAAACTACATCAACACTCCAGATCAGGTAGCTGAAGTCACTAGGCTTCTAAGAGCTGGTATTGTGCCAATGCATCAATATTCTCATTTGAACTTTCCAGTATCATCATCATCATCATCATCACCCTTAGATGCAGGAGGATTCACCATTTCAGGACTTAATTTGAATCTTGGAGGTGCAACTTCATCACAACAACCTATTTTGAGGCCAATGCCATCAACTACTACTACTACTACTACTCATCATATGGCAGCTCATCAACTGCATGATTTCAGTTCCAATAACATGATTAGTAATAATAATACTAATGTTGTTGGATATGGTGGTGGAGATCAAGTGAATAATTCAAACCCTAATGGTCATGGAAATAATAATAGGTACAATATGCAGGGTACTATTGACCATTGTGTGGATCTTGATAATTATTGGCCACCTTCTTACTGA 1107 0.3975 METEGNGVKEETLPPGFRFHPTDEELITYYLVNRISDSDHFTCKAIGDVDLNKCEPWELPGKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSTFRNNKDEWVVSRVFRKSAGVKKYYPSLNPTRAVMNNPYNINLEVGPNSMNMPPPPSMMQLGLDSSAAAHNFHLYGRNYINTPDQVAEVTRLLRAGIVPMHQYSHLNFPVSSSSSSSPLDAGGFTISGLNLNLGGATSSQQPILRPMPSTTTTTTTHHMAAHQLHDFSSNNMISNNNTNVVGYGGGDQVNNSNPNGHGNNNRYNMQGTIDHCVDLDNYWPPSY 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04402 368 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 296 - -
Vifa3g04402 368 SUPERFAMILY NAC domain 9 162 IPR036093 GO:0003677|GO:0006355
Vifa3g04402 368 FunFam NAC domain-containing protein 100-like 22 166 - -
Vifa3g04402 368 Gene3D NAC domain 22 166 IPR036093 GO:0003677|GO:0006355
Vifa3g04402 368 ProSiteProfiles NAC domain profile. 13 162 IPR003441 GO:0003677|GO:0006355
Vifa3g04402 368 Pfam No apical meristem (NAM) protein 14 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04402 Vifa-Chr3 1259627158 1259628789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04402 9 365 NAC Transcription Factor Family AT2G24430 49.326 3.17e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa3g04402 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04402 - - lja:Lj1g3v2035130.1 426.402