Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04400 ATGTATTTTGGAAATGCGATAGTGAATGTGGTGGCTACAAGTCTTGCAGGTGATTTAATGTCTAAGTCATTAGGATATGCTTCGAGTAGGATAAAAGAAGCAATTGAGAAAGTGAATGATGAGTATGTGAGATCCACGTTGACTGATTATAAAAAAAGAGACTATGATCGGACTATAATGCATGTTTACCCTCTTCCATTTTATCGAAATCCTAATTTAGGAGCGGTTAGTTGGACGATGCTCTCATATCAAAATTTTGATTTTGGATGGGGGGAGGAGGTTTATGTGATACCAGGAATACATAATATACTTGAAGGAGAAACATACATTCTTCCTGGTTCTCAAGTTGATGGATCTTTGGTGTGTTTTATTTGTTTGCAGGAGGTCTATATGAGTGCCTTTAAAAGACATTTTTATGAAGGTGTTATTGAGTTGGACTCTCTCTCAAAGTTGTAA 456 0.3618 MYFGNAIVNVVATSLAGDLMSKSLGYASSRIKEAIEKVNDEYVRSTLTDYKKRDYDRTIMHVYPLPFYRNPNLGAVSWTMLSYQNFDFGWGEEVYVIPGIHNILEGETYILPGSQVDGSLVCFICLQEVYMSAFKRHFYEGVIELDSLSKL 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04400 151 Pfam Transferase family 2 140 - -
Vifa3g04400 151 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 2 136 - -
Vifa3g04400 151 Gene3D - 1 141 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04400 Vifa-Chr3 1258221054 1258221509 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04400 2 140 Monolignol Biosynthesis Gene Families AT5G48930 37.410 1.81e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04400 K13065 - gmx:100777007 147.902