Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04399 ATGTCTTCCTCGTCATCAATAACATTGAAAGGTTGTTACACTGTGACACCAATGGAACCAACATGGAGAGGTTGTTTACCATTAACCGAATTTGATCAACTTGGAATCGCAATCTACACTCCAATTCTTTTCTATTACCGCCCACCACAAAATTGGCTTACTCCCCCTACTAAAATTGCCACCACTTTGAAACACTCACTAAGCAAAGTTCTCATACATTTTTATCCATTAGCTGGTCGTCTACGATCGAAAGGTAATAAGCATTTTGAACTAGAATGCAACGCAAAAGGTGCTCAGTTCATCGAAGCAGAATCCTCTTTAACATTATCTGATCTTGGTGACTTTTCCTCCTCTTCTGACAATTATCGTAGTTACCTTTTCCCGCAAGTTGACTACACACTCCCAATTCAAGATCGTCCTTTGCTGATTGTCCAACTCACGAATTTCAAATGCGGTGACATTAGCATTAGTTTGTTAGCGTCACATGCAGTGGTTGATGGACAAAGTGCAACACATTTCATTGCTGAGTGGGCTCAGTTAGCACGAGGAGAACCTTTAAAAAGGGTTCCGTTTCTCGATAGAAACATCTTACATAATAAGGAACCATGCAATGGTGTAAATGAGTGCAAGTTTGATAAACCTCCGCTTTTGTTGGAAAATTCAGATAGTAATGTTGAGGAAGAAAGAAAGAAAAAAACAACGGTTGCTATAATCCATGTAAGTAAAGCACAAGTTGAAAGGTTGAGAAAAATAGCGAATGAGAGTTGGAATAAACCAAGTAATGAACGAAATTATACAATTTATGAAACGATAACCGGTCATATTTGGAGAAGTGCATGTATAGCTAGAGGGCTTAAAATTGACCAACCAACTGTGTTTGGTGTCGTTGTTGATTTTAGAAGTCGTGTGAAACCTAGTTTACCAAAAAAGTATTTTGGAAATGCGATAGTGAATGTGGTAGCTACAAGTCTTGCAGGTGATTTAATGTCTAAGCCATTAGGATATGCTTCGAGTAGGATAAAGGAAGCAATTGAGAAGGTGAATGATGAGTATGTGAGATCGACGTTGACTGATTACAAAAAGAGAGACTATGATCGGACTATGATGCATGTTTACACTGTGCCATTTTATCGAAATCCTAATTTAGGAGCGCTTAGTTGGATGATGTTCTCATATCACAAATTTGATTTTGGATGGGGGGAGGAGGTTTATATGATACCAGGAATACATACTATACTTGAAGGAGAAACGTACATTCTTCCTAGTTCTCAAGTTGATGGAACTTTGGTGTGTTTTATTTGTTTGCAAGAGGTCTATATGAGTGCCTTTAAAAAACATTTTTATGAAGGTATTATTGAGTTGGACTCTCTCTCAAAGTTGTAA 1383 0.3782 MSSSSSITLKGCYTVTPMEPTWRGCLPLTEFDQLGIAIYTPILFYYRPPQNWLTPPTKIATTLKHSLSKVLIHFYPLAGRLRSKGNKHFELECNAKGAQFIEAESSLTLSDLGDFSSSSDNYRSYLFPQVDYTLPIQDRPLLIVQLTNFKCGDISISLLASHAVVDGQSATHFIAEWAQLARGEPLKRVPFLDRNILHNKEPCNGVNECKFDKPPLLLENSDSNVEEERKKKTTVAIIHVSKAQVERLRKIANESWNKPSNERNYTIYETITGHIWRSACIARGLKIDQPTVFGVVVDFRSRVKPSLPKKYFGNAIVNVVATSLAGDLMSKPLGYASSRIKEAIEKVNDEYVRSTLTDYKKRDYDRTMMHVYTVPFYRNPNLGALSWMMFSYHKFDFGWGEEVYMIPGIHTILEGETYILPSSQVDGTLVCFICLQEVYMSAFKKHFYEGIIELDSLSKL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04399 460 Pfam Transferase family 6 449 - -
Vifa3g04399 460 SUPERFAMILY CoA-dependent acyltransferases 97 185 - -
Vifa3g04399 460 Gene3D - 7 212 IPR023213 -
Vifa3g04399 460 Gene3D - 221 450 IPR023213 -
Vifa3g04399 460 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 15 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04399 Vifa-Chr3 1258204782 1258206164 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04399 14 449 Monolignol Biosynthesis Gene Families AT5G48930 35.973 1.17e-86 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04399 K13065 - gmx:100777532 453.366