Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04375 ATGATGTTGTTTTGTGTTAGGTTTCAAGAGCAATCTGAATTGAGTTATTGTAATGCCTCGCAATTTCAAGTGGCGATTGAGGAAGCGTTTTTGGCTGATCAGGGGTTTGTAGAGAACTTGAATGAAGATTTGAGTGCAGTGGCTGGTAATAATGGTTGTAGTAATAGTTCTATTCTTAAAGCCTTTCAGAATGTAGCTGCTTCAAATAAGAATGTGGGTGGTCCTGTTCAGAAGAAGGATTTATTTGAAAGAGAGAAAAATGCGCGACTTTGTGCAGAATGTGGATTGGACGTTCCTCTCAATATGTCAAAGAAAAGAAAGGATTTGACTCCTAGTGGTCAACTCCTATGCAAAACATGTGCCAGGTTAACAAAATCAAAACATTATTGTGGCATATGTAAGAAAGTTTGGAATCAATCGGATAGTGGAAGCTGGGTCCGTTGTGATGGATGTAAAGTGTGGGTGCATGCTGAATGCGACAAAATCTCCAGCATCCTTTTCAAGAATCTTGGAAGCACGGATTATTTCTGCCCTGCTTGCAAAGTGAAGTTTAATTTTGAATTATCGGATTCAGAAAAATCAAATCCAAAAGTCAAATGGAACAAAAAAAATGGGCAGCTAGGACTTCCAAAAAAGGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTTATGTGCAAGTGTGGTTTTTGTGATACTGAAAAGCAAGCACTTAGTGAATGGGAACGCCACACAGGTTCCAAATTTAGAAACTGGAGAACAAGTATTCGGATTAAAGGATCCATGATATCGCTAGAACAATGGATGCTGCAGTTGGCAGAATTTCATGCTAAAGCTGTAGTTTATGTCAAACCTAAAAGACCATCCACAAAAGAAAGAAAACAGAAATTGCTTAACTTTCTGCAAGACAAGTATGAACCCGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGCAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATCTGCGTCAGATGCCAAATAGCCGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCATGGGTTTGTAAAGCTTGTGAAACACCAGACATCACGCGGGAATGTTGTCTTTGTCCTGTAAAAGGTGGCGCTCTAAAGCCTACTGATGTTGATCCATTATGGGTTCATGTCACTTGTGCCTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAGAAAATGGAGCCTGCTTTGGGTATCTTAAGTATTCCATCGAACTCTTTCGTGAAGATTTGTGTTATTTGTAAGCAAATACATGGCTCGTGCACACAATGTTGCAAGTGTTCCACTTATTACCATGCCATGTGTGCATCAAGGGCCGGTTATCGCATGGAGTTGCATTGTTCGGAGAAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTATCACAGGGCTCCCAATCCAGACACTGTTTTGATTATACAAACTCCTCAAGGGGTCATTTCAACTAAAATCCTTATCCAAAAAAAGAGAAAAGTCGGGTCAAGATTAATTTCGTCGAACAGAATAAAGGAAGAAGGCACTCCTCTAGCAGATAACACCGAACATGATCCATTTTCTGCGGCTAAGTGCCGAATCTTTGTAAGAATAAACCGCACAAAAAAGAGAGCAGCAGATGAAGCCGTTCCTCATAAAGTGAGGGGTCACTGCCGTCATCCTCTAGATGCAATTCAGAGATTAAGTCCATGCAAAGTGGTAGATGAGTCTCGGACATTTTCATCATTTAAGGAACGCCTTCATCACCTACAGAGAACCGAAAATGAACGAGTGTGCTTCGGTAGATCAGGCATACATGGATGGGGTCTGTTTGCACGAAGAATTATTCAAGAAGGAGAAATGGTCCTTGAATATCGTGGCGAACAAGTAAGGCGCAGCGTTGCAGACCTGAGGGAGGCACGCTATAAATTAGAAAGGAAAGACTGCTATCTTTTCAAAATAAGTGAAGAAGTGGTAGTTGATGCAACCGATAAGGGAAATATAGCGCGGCTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGAATCATGTGTGTGGGTCATGACGAGAGCCGGATCGCACTCATCGCCAAGACTAAAGTATCTGCTGGTGACGAGCTAACGTATGACTACTTGTTTGATCCTGACGAGCCAGATGAATTTAAAGTTCCATGTTTATGTAAAGCTCCAAACTGCAGGAAATTCATGAACTAG 2271 0.4095 MMLFCVRFQEQSELSYCNASQFQVAIEEAFLADQGFVENLNEDLSAVAGNNGCSNSSILKAFQNVAASNKNVGGPVQKKDLFEREKNARLCAECGLDVPLNMSKKRKDLTPSGQLLCKTCARLTKSKHYCGICKKVWNQSDSGSWVRCDGCKVWVHAECDKISSILFKNLGSTDYFCPACKVKFNFELSDSEKSNPKVKWNKKNGQLGLPKKVTVLCNGVEGIYFPSLHLVMCKCGFCDTEKQALSEWERHTGSKFRNWRTSIRIKGSMISLEQWMLQLAEFHAKAVVYVKPKRPSTKERKQKLLNFLQDKYEPVCAKWTTERCAVCRWVEDWDYNKIIICVRCQIAVHQECYGARNVRDFTSWVCKACETPDITRECCLCPVKGGALKPTDVDPLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYYHAMCASRAGYRMELHCSEKNGKQTTRMVSYCAYHRAPNPDTVLIIQTPQGVISTKILIQKKRKVGSRLISSNRIKEEGTPLADNTEHDPFSAAKCRIFVRINRTKKRAADEAVPHKVRGHCRHPLDAIQRLSPCKVVDESRTFSSFKERLHHLQRTENERVCFGRSGIHGWGLFARRIIQEGEMVLEYRGEQVRRSVADLREARYKLERKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMCVGHDESRIALIAKTKVSAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04375 756 CDD ePHD_ATX3_4_5_like 378 489 IPR041955 -
Vifa3g04375 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 184 IPR013083 -
Vifa3g04375 756 FunFam Histone-lysine N-methyltransferase 373 492 - -
Vifa3g04375 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 372 IPR013083 -
Vifa3g04375 756 ProSiteProfiles Zinc finger PHD-type profile. 321 372 IPR019787 -
Vifa3g04375 756 SMART set_7 614 737 IPR001214 GO:0005515
Vifa3g04375 756 ProSitePatterns Zinc finger PHD-type signature. 324 369 IPR019786 -
Vifa3g04375 756 Pfam PHD-finger 336 370 - -
Vifa3g04375 756 CDD PHD_TCF19_like 130 180 - -
Vifa3g04375 756 ProSiteProfiles Post-SET domain profile. 740 756 IPR003616 -
Vifa3g04375 756 SUPERFAMILY FYVE/PHD zinc finger 322 386 IPR011011 -
Vifa3g04375 756 SMART PostSET_3 740 756 IPR003616 -
Vifa3g04375 756 ProSitePatterns Zinc finger PHD-type signature. 117 180 IPR019786 -
Vifa3g04375 756 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 4 756 IPR025780 -
Vifa3g04375 756 Gene3D SET domain 513 756 IPR046341 -
Vifa3g04375 756 FunFam Histone-lysine N-methyltransferase 589 756 - -
Vifa3g04375 756 ProSiteProfiles Extended PHD (ePHD) domain profile. 375 490 IPR034732 -
Vifa3g04375 756 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 492 IPR013083 -
Vifa3g04375 756 ProSiteProfiles SET domain profile. 614 731 IPR001214 GO:0005515
Vifa3g04375 756 ProSiteProfiles Zinc finger PHD-type profile. 127 183 IPR019787 -
Vifa3g04375 756 Pfam SET domain 625 730 IPR001214 GO:0005515
Vifa3g04375 756 SMART PHD_3 434 490 IPR001965 -
Vifa3g04375 756 SMART PHD_3 323 370 IPR001965 -
Vifa3g04375 756 SMART PHD_3 129 181 IPR001965 -
Vifa3g04375 756 PANTHER PHD FINGER PROTEINS 293 736 - -
Vifa3g04375 756 Pfam PHD-zinc-finger like domain 377 489 - -
Vifa3g04375 756 Pfam PHD-finger 129 182 IPR019787 -
Vifa3g04375 756 SUPERFAMILY FYVE/PHD zinc finger 127 185 IPR011011 -
Vifa3g04375 756 CDD SET_SETD1-like 603 752 - -
Vifa3g04375 756 CDD PHD_ATX3_4_5_like 323 369 IPR042011 -
Vifa3g04375 756 SUPERFAMILY SET domain 606 753 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04375 Vifa-Chr3 1251878213 1251884945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04375 324 489 C2H2 Transcription Factor Family AT3G14740 33.714 2.59e-18 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa3g04375 zf-HC5HC2H_2 5.1e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04375 - - gmx:100775276 1278.46