Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04374 ATGTTTGCAGAAACTGGCCTTCTCTTCCCTTACCTACAGAATTACTCTCAAGAGTTTCAACAACTTGAAGAATATTGCATGACTCACAAATCCAATGCTTCAATGAGTGACCTTGTTCAATCATCTGCAATGTCAGAATTTGATTTATTTGTAGAGGGAGATCTGTTCAAAGCGCCCGAGACGATTATGGAAGAACCGGAGATGGACCTTGATCCTATGCACATGTCAATGATATCTTGTGGCGAAGATATGTCGTCGCAGGGTCTAAAATCTTCGGATATTGATAATGTACTTCAAAATGAACAGCTTTTAAGTGAGGTATACTATGAGTGCAAAAAAGATCTCTTGGAAAAGGCAAATATAGAGTCGCCTCTGTCTGAAATTCTTGAAATCAAGATTCCTGCTCTGAACATCGAGGAGAATACGGTTCAAGAAAACAAACCAATTCCTGATGTACTATTGCCAAAGAGTGTTAGTTCAGGAAGTTTGAGTTCAATGGATTGGATGCATGGAGCTGCGATGAAGCCTGCTTTCCTTGATTTCCCTGGAATTGATTTCAACGCGGTTTATGGCATGCGGAGGGCATTTAGTGAAGGAGATATAAAGACTCTTGGAAATGGTAACGTGAGTGTTGGCCAATCTACTCTTGAGAGGCCTTTTCTTCACAGCAACTGCACGAGTGAGCAACGTCAAGAAAAACTCTCTAGATATAGGAATAAGAAAACCAGGAGAAACTTTGGGAGGAAGATAAAGTATGCTTGCAGGAAGGCGCTGGCTGACAGTCAACCAAGAATCCGTGGAAGATTCGCGAAAACGGAGGAAATTGATGTCAAAAGGCAATGA 843 0.414 MFAETGLLFPYLQNYSQEFQQLEEYCMTHKSNASMSDLVQSSAMSEFDLFVEGDLFKAPETIMEEPEMDLDPMHMSMISCGEDMSSQGLKSSDIDNVLQNEQLLSEVYYECKKDLLEKANIESPLSEILEIKIPALNIEENTVQENKPIPDVLLPKSVSSGSLSSMDWMHGAAMKPAFLDFPGIDFNAVYGMRRAFSEGDIKTLGNGNVSVGQSTLERPFLHSNCTSEQRQEKLSRYRNKKTRRNFGRKIKYACRKALADSQPRIRGRFAKTEEIDVKRQ 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04374 280 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 165 274 IPR045281 GO:0009909
Vifa3g04374 280 ProSiteProfiles CCT domain profile. 230 272 IPR010402 GO:0005515
Vifa3g04374 280 Pfam CCT motif 230 272 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04374 Vifa-Chr3 1251393615 1251396272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04374 205 276 C2C2-CO-like Transcription Factor Family AT5G57660 43.243 6.08e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g04374 CCT 1.8e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04374 - - aprc:113853022 439.884