Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04370 ATGGAGCTAGAATTAAGTTCATTGAAGGAAAGGATAATGAAGAAAGAAGTTGTTGGGTCAATTCCAGAAGGTCTAGACAATCTTCCTGTTGTACAGTACTTGAACATTTCTTTTAACAGGTTAGATGGTGAAGTAGCAACAGAAGATCACCTTCCAAAGGTCTCATACAAAACACTTTATCAAGCAACAAGTGGATTCTCTTCCAACAACTTGATAGGATCTGGTGGTTTCGGAACTGTATATAAAGGAATTCTTGAGTCAGAAGAAAGAGTTGTTGCTATAAAGGTCTTGAACCTTCAAGTCAAGGGAGCGCACAAGAGTTTCATCGCTGAATGTAACGCACTCAAAAGTATCCGTCATAGGAATCTAGTCAAGGTTCTAACGTGTTGCTCAAGTATGGATTACAGTGGTAACGAATTCAAAGCTTTAGTTTTTGAATACATGGAGCATGGAAGCTTGGACAAAAGGCTGCTTCCTGACTCCGAAATTGCAGATCAATCAAATTTGAACCTTTTTCAAAGACTAAATATTCTCACAGATGTAGCTTCTGCAGTACACTATCTACACTATGAAACTGAGCAGCCAATCATTCACTGTGATTTAAAGCCAAGCAATATCCTTCTTGATCACAAAATATCAAATTGTTCTCTTTCTTATTTTTATTAG 666 0.3724 MELELSSLKERIMKKEVVGSIPEGLDNLPVVQYLNISFNRLDGEVATEDHLPKVSYKTLYQATSGFSSNNLIGSGGFGTVYKGILESEERVVAIKVLNLQVKGAHKSFIAECNALKSIRHRNLVKVLTCCSSMDYSGNEFKALVFEYMEHGSLDKRLLPDSEIADQSNLNLFQRLNILTDVASAVHYLHYETEQPIIHCDLKPSNILLDHKISNCSLSYFY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04370 221 ProSiteProfiles Protein kinase domain profile. 66 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04370 221 Gene3D Phosphorylase Kinase; domain 1 45 147 - -
Vifa3g04370 221 SUPERFAMILY Protein kinase-like (PK-like) 47 212 IPR011009 -
Vifa3g04370 221 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Vifa3g04370 221 Pfam Protein kinase domain 68 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04370 221 ProSitePatterns Protein kinases ATP-binding region signature. 72 95 IPR017441 GO:0005524
Vifa3g04370 221 SMART serkin_6 66 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04370 221 Gene3D Transferase(Phosphotransferase) domain 1 148 220 - -
Vifa3g04370 221 FunFam LRR receptor-like serine/threonine-protein kinase EFR 39 147 - -
Vifa3g04370 221 PANTHER OS04G0122200 PROTEIN 51 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04370 Vifa-Chr3 1249593597 1249594788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04370 53 213 Receptor kinase-like Gene Family AT3G47570 59.146 1.02e-59 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa3g04370 Pkinase 9.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04370 - - ahf:112742943 250.751