Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04367 ATGGAGTTTGATCGACTTGAACTGTCCGATCCGGGTGGTTCGTCACGTTCCACCGCGCCTCTAACAAACTCCACCACATTCAACTCCAACCAGAAAAACAAAAAGAAAGTCATCATGCTTTCAATACTCGCCGCGGCTTTAATCATCGCCTCCGCGGTCTCCGCCGCACTCATCACCGTCGTCCGTTCGCGCGCTTCCGATAATCAAAGCACCTCAAACCTCCGCGCCAAGCCAACTCAAGCAATCTCCCGAACCTGCAGCAAGACGAGATTCCCCACACTTTGCATCAATTCACTCCTCGACTTCCCGGGATCCACCTCCGCCTCAGAGCAAGAACTCGTTCATATCTCATTCAACATGACACACCGCCACATCAGCAAGGCACTCTTTGCGTCCTCAGGCCTCTCGTATACAGTCGCAGACACTAAAGTCCGTGCTGCATACGAGGATTGCCTGGAACTGATGGACTCGTCCATGGACGCAATAAAGCTTTCCATGGACTCTCTCACAACCATGTCCTCAACTTTATCCCGCAATGATCAAGAAACTGGTCTCACAGGATCAAACGACGACGTCATGACGTGGCTAAGTGCCGCGTTAACAAACCAAGACACGTGTTTGGAGGGATTTGATGACACTACAGGCAATGTTAAGGATCAGATGGTTGGAAATTTAAAGGACCTGTCGGAACTCGTGAGTAATTCTCTAGCGATATTTTCTTCGAGTAGTGACGGTGATTTCACGGGTGTGCCGATACAGAACAAAAGAAGATTAATGGGAATTGATGATAAAAAGCGTGATAGTGATGTTATTGTCGGTGATATCTCGCGAGAATTTCCGGAATGGCTTCACAAACGAGATAGGAGATTGTTGAGTTTACCGGTATCGGAGATTCAAGCTGATATCGTCGTTTCAAATAGTGGCGGAGACGGCACGGTGAAGACAATTGCAGAAGCTATTAAGAATGCGCCGGAACATAGTAGCCGCCGATTCATAATCTACGTAAGGGCAGGAAGGTATGAAGAGAATAATTTAAAGATTGGAAAAAAGAAAACCAACATCATGTTTATAGGAGATGGGAAGGGCAAAACTGTCATTACAGGAAGAAAAAGTGTTGCAGATGGCATGACCACTTTCCACACCGCTTCCTTTGCTGCTAGTGGTGCTGGATTCATGGCACGTGATATCACATTTGAGAACTATGCTGGACCGGAGAAGCACCAAGCGGTGGCTCTCCGTGTCGGAGCCGATCACGCGGTGGTGTACCACTGCGACATTGTGGGGTATCAAGACTCGTGCTATGTACACTCTAACCGTCAATTCTACCGTGAATGTAGCATCTATGGCACGGTCGATTTTATATTTGGAAATGCTGCAGTAGTTTTTCAAAAATGCAACATTTACGCGCGTAAGCCCATGGCCCAACAAAAGAACACAATCACAGCACAAAATAGAAAAGACCCGAATCAAAATACAGGTATATCCATTCATGATTGCCGGATCTTGCCCGCCCCGGAGCTCGCTGCATCAAAGGGCAGCATTGAGACGTATTTGGGCCGTCCATGGAAAACGTATGCTAGGACCGTCTATATGTTGTCCTACATAAGTGATCATGTGCATCCACATGGATGGCTAGAATGGAATGGAGAATTTGCTTTAAAAACATTGTATTATGGTGAGTACATGAACTATGGGCCGGGTGCGGCCATCGGGAAACGGGTCAAATGGCCCGGATACCGCGTCATTACTTCTACGGTGGAGGCCAATCGATACACAGTGGCCCAATTCATCTCCGGTTCATCGTGGTTACCGTCCACCGGCGTGGCATTTTTGGCCGGGCTATCCACTTGA 1851 0.4792 MEFDRLELSDPGGSSRSTAPLTNSTTFNSNQKNKKKVIMLSILAAALIIASAVSAALITVVRSRASDNQSTSNLRAKPTQAISRTCSKTRFPTLCINSLLDFPGSTSASEQELVHISFNMTHRHISKALFASSGLSYTVADTKVRAAYEDCLELMDSSMDAIKLSMDSLTTMSSTLSRNDQETGLTGSNDDVMTWLSAALTNQDTCLEGFDDTTGNVKDQMVGNLKDLSELVSNSLAIFSSSSDGDFTGVPIQNKRRLMGIDDKKRDSDVIVGDISREFPEWLHKRDRRLLSLPVSEIQADIVVSNSGGDGTVKTIAEAIKNAPEHSSRRFIIYVRAGRYEENNLKIGKKKTNIMFIGDGKGKTVITGRKSVADGMTTFHTASFAASGAGFMARDITFENYAGPEKHQAVALRVGADHAVVYHCDIVGYQDSCYVHSNRQFYRECSIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISIHDCRILPAPELAASKGSIETYLGRPWKTYARTVYMLSYISDHVHPHGWLEWNGEFALKTLYYGEYMNYGPGAAIGKRVKWPGYRVITSTVEANRYTVAQFISGSSWLPSTGVAFLAGLST 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04367 616 CDD PMEI-like_3 86 240 - -
Vifa3g04367 616 FunFam Pectinesterase 295 614 - -
Vifa3g04367 616 MobiDBLite consensus disorder prediction 11 28 - -
Vifa3g04367 616 SUPERFAMILY Pectin lyase-like 298 613 IPR011050 -
Vifa3g04367 616 Pfam Plant invertase/pectin methylesterase inhibitor 81 238 IPR006501 GO:0004857
Vifa3g04367 616 NCBIfam pectinesterase inhibitor domain 63 239 IPR006501 GO:0004857
Vifa3g04367 616 Gene3D - 295 614 IPR012334 -
Vifa3g04367 616 Pfam Pectinesterase 301 599 IPR000070 GO:0030599|GO:0042545
Vifa3g04367 616 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 241 IPR035513 -
Vifa3g04367 616 PANTHER PECTINESTERASE 49 604 - -
Vifa3g04367 616 MobiDBLite consensus disorder prediction 1 28 - -
Vifa3g04367 616 ProSitePatterns Pectinesterase signature 2. 447 456 IPR033131 -
Vifa3g04367 616 SMART PMEI_2 77 238 IPR006501 GO:0004857
Vifa3g04367 616 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 240 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04367 Vifa-Chr3 1248449228 1248452312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04367 1 615 Carbohydrate Esterase AT5G53370 60.680 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04367 - - gmx:106796002 914.064