Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04366 ATGGACTTGGATAGTATTGAGTGTGTTTCATCTTCTGATGGAATGGATGAAGATGAGATCCAACATCGTATTCTTCACCCTCATCAACATCAACATCAACATCAACATCATCATCATCATCACTCTGAGTTTTCTTCATTGAAACCTCGTAATGGAGGAAACACTAATAATGTTAATCATCTTATTGGTTCTACAGCTATTGCTCCTGCTACTAGTGTTCATGAGTTGTTGGAATGTCCTGTTTGTACCAATTCAATGTATCCTCCAATTCATCAGTGCCACAATGGTCACACATTGTGTTCCACATGTAAAACAAGGGTGCACAATCGATGTCCGACATGTAGACAAGAGCTTGGAGATATACGGTGTCTGGCTCTAGAGAAGGTTGCCGAATCACTCGAGTTACCATGCAAGTACTACTCTCTTGGATGTCCTGAAATCTTTCCATACTACGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCGCGTGATGTAGAGAATGCTACTTGGATGCTCACCGTATTTCATTGTTTCGGCCAATACTTCTGTCTTCACTTTGAAGCTTTCCAGCTAGGCATGGCTCCGGTTTACATGGCATTCCTTCGTTTCATGGGAGATGAGAACGACGCTCGAAACTATACATATAGCCTCGAAGTTGGAGCAAATGGAAGAAAGCTCATTTGGGAAGGTACACCACGGAGTATCCGCGACAGCCACCGTAAAGTTCGAGATAGTCACGACGGACTCATAATTCAACGAAATATGGCCTTATTTTTCTCTGGTGGTGATAGGAAAGAACTGAAACTTAGAGTGACAGGAAGAATATGGAAAGAACAGCAGAATCCGGATGGTGGGGTGTGTATACCAAATCTTTGCAGCTAA 888 0.4245 MDLDSIECVSSSDGMDEDEIQHRILHPHQHQHQHQHHHHHHSEFSSLKPRNGGNTNNVNHLIGSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYGCTFNHRYVKSNPRDVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARNYTYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04366 295 SUPERFAMILY RING/U-box 71 119 - -
Vifa3g04366 295 MobiDBLite consensus disorder prediction 27 59 - -
Vifa3g04366 295 FunFam E3 ubiquitin-protein ligase SINAT5-like 147 274 - -
Vifa3g04366 295 MobiDBLite consensus disorder prediction 27 44 - -
Vifa3g04366 295 CDD RING-HC_SIAHs 77 115 - -
Vifa3g04366 295 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 162 274 IPR008974 GO:0005515
Vifa3g04366 295 SUPERFAMILY TRAF domain-like 132 278 - -
Vifa3g04366 295 ProSiteProfiles Zinc finger RING-type profile. 79 115 IPR001841 -
Vifa3g04366 295 CDD Sina 156 275 - -
Vifa3g04366 295 Pfam Seven in absentia protein family 152 274 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vifa3g04366 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 161 IPR013083 -
Vifa3g04366 295 FunFam E3 ubiquitin-protein ligase SINAT3 11 131 - -
Vifa3g04366 295 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 50 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04366 Vifa-Chr3 1248091764 1248094642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04366 70 281 C3H Transcription Factor Family AT2G41980 66.279 3.73e-124 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04366 K04506 - cave:132180687 521.546