Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04363 ATGGATGTAGGTGGTGATGGAGAGTTCGGGAGGTGTAATAGAAATGGGTCTGAATGGCGGTGTAAAGAGAGAGCTTTACCTGGAAATCTTCAATGTGAAAAGCATGCGCTTGAGAGAAAGAAAAACAGGAAGGAAAGTAGTTCTGGGAGAAAAAGAAAAGCTGAAGAAAGTTCACTAAATGGGGTTCTTGTTGTTGATGATGATGGAGGTGAAGGGTTGTTTGATGGCGGTGATGGTGGGATTTTTGCTGAAGGTGAAGTGAATGGTGGTGTTAATCTTGGTATTGGTTCTGAGAGTTTTAATCTCTGGCAACAAGGAGAGGGTCAACAGCTTGAGGTTTTTGGAGAGGGAAGTGGAAATTTAGGTAAGTTTCTTGGTGATGGAGTTGAGTTTTTAGGTGGGTTTGTTGAGGATAGGAATGTTGTTGGTTTAGGTCAGCCATGGAGTAGTGTAGGTGTATTTGGGAATGCTGGTGGGGTTGCTGGTGTTGTGAAAGAAGATCATGGAAACCGCGTTGGCGGTGTTTGTCGAAATGACTCACTTGGTTTTCATTCTCAAGGAATTCAAGGGTTGATTGGCGAAGAAGAAGCTGGTTTTGGGAATTTATATGATAGGAGTTTTCAAGCACTTCTTTGTCAAGGGAAGGTTTGTGATGAAGATGTGAATTTAATTGGTGGTGCACCAGGCTTTCAAGGGTTGGTTGGTGAAAGTGCTTATGATTTTAGAGGTGAGGTTGGTGAGGGTGTGGGAAATCTAAGTCAGCATGACGGTAAATTCGGTGGTGAAAAAAATGTTGGTAATATACTAGAGGCTCCTAGTTCAAGTGACAAGATGAAAGCCATTGGTGTTGAAGAGGGAATGGAACTGTTACCAAGTGGAGGAGTTTCTACTAATGAAGAGGCAAGACCTGAAGTTTTGAAGCCATTGACTAATAGAGGAGGAAGGCCTAAGGGTTCTAAGAATAAGAAGAAGAAAGGGGTTAGCTTAGTTTTGGACGGAGAAGCAGTTTGTGGAAGTGATAATGCAGGAACAGTTGGGATGGGTACGGTTGAAGTTTTAGAGAATGAAAAATCAGTGTTTTGTGGCAAGTCTGACGGGGAAGGTGTGGACATGGGTGAGATTGAAAGGACAAGGGAGTGTAGTCCACCGCAAAATCAGAAGTGTACAAGGGAGATTGTCTCGGCGCCTGGTTATGAAGTTGCCGGGGTTGGTGAGATTTCAAGACCGCTAAACAAAGAGAAGAATGTTAAGGAGGTTAGTAGTGAAGTTGCTGTTAAGATAGCAAGGCCTAAGAAGCGTGGTCGGCCAAAGGGTTCAACAAATAAAAAGGTAACCCGTAGTGCTTCTAGCAAAGAAGGAGCTGGTGACATTGCAATACAAGGTTCAGAAGAAAAAATTCTGATTGTTCCGTATCAGAAAGATGCAGATGAGTTTGCAAGCCTAACTAATAAATTGGGAAGTACTGAATTTGAGGGTTATAAGCATCCAGGAATGTCTAGTAATGTTCGTCTTGAAGAAAATGATGGAACTGCAAGTGGTTTGGAGATTACTACACTGGCTCCTTTATGTGAGACGGAAAAAGGGATCCCTTTTGAATCTGCCAAACATATTGAAAACTTAACTACGCCGCCGATAGTTAAGCGTGGTCGACCTAAGGGCTCAAAGAACAAGAAGAAAACGCCAGCCGATCAGGAGCACATAGGCCATGGAGGTGACATCATTAAGCTAATTGGTATGGAAAATTACGAAGCCACTGCTGTTAGTGTCGGGGATCAGGAATTGGTGGTTCAAACCCTTGGTCAAGATGAGGTTGAGAATGTTAAACCAAAGATGGGTCGACCAAAGGGATCTAAAAATAAGAAGAAAAATATTGATGGTGAAGCTGAAAATGAGTTACATAAGGAGAAAAAGAAACCTGCTAGGCCTAAGGGTTCTGGCGAAAAGCAAAAGGAGACTGGAAATGAAAAGATAGCAAAGGGATTGGTGAGTGAATCCAGCAATGTCCATAAGATTAAAAGGCGTGGTAGGCCAAAGGGTTCAGGCAAAAAGCAAAAGGAGAACGCTTCTCGATTGGATGCAGAGATTGAATGTGAGAAGAATAGATGTGTTGATGGAATTTTGAGTACGACTATGCCACATAAACATATACACGAGGAATCCATTTTACTGCTAGAAGATCAAGTAAATAAGAAAGATGAGGCAGATTTTGTTCTTGAGTGCACAAAGGAGTCTGGAATTGAAAAGGTAGCAAATGGATTGGTGAGTGAATCCGACAATGTCCATAAGACTCAGGATGTCGAAGTGGCTGATATTTTTTATGAAAAGGAAGTGAAAGAAACTATAGACCATGGATTGGAATCTTCAGATATGATGGGTGACTGTGAGACCAAAAAGGAGCCAAGGAATTCAAGGTGCCATCAATGCTGGAAGAAGAGTAGAACTGGTCTTGTTGTTTGTTCCAAGTGCAAAAAAAAGAAATATTGCTACGAGTGCATAGCAAAATGGTACCAAGATAAAACTAGAGAGGAGATAGAGACTGCTTGTCCCTTTTGTCTGGACTATTGCAATTGTCGAATGTGCTTGAAGAAAGCTATATCTACAATGAATGGGAATGATGAAGCAGATAGAGATGTCAAATTACGGAAACTGTTTTACTTGCTTAAAAAAACTTTGCCATTACTCCAAGATATCCAACGGGAGCAGAGATATGAGTTGGAAGTAGAAGCAAGCATGCACGGTTCCCAGTTGGTGGAAGAGGGGGATATTCGGAAGGCAGAAGTTGATGATGATGATCGAGTTTATTGTGATAACTGCAATACATCCATTGTCAATTTCCACAGAAGCTGTTCCAATCCTAATTGTCAGTATGATCTCTGTCTTACTTGTTGCACTGAACTAAGACTTGGAGTTCATTGTGAAGATATTCCTGCTAGTGGTAATGAGGAAATGGTCGACGCACCACCTGAATCTATTCCTTGGAGAGCAGAGACAAATGGCAGTATTCCCTGCCCTCCGGAAGCTAGAGGAGGTTGCGGTATTGCTATCCTCTCACTGAGGCGCCTATTCGAAGCTAATTGGATTGACAAGTTGACTAGAGGTGTGGAGGAACTTACCGTCAAATATCAGCCACCAATTATTGATCTTTCTCTAGGATGTTCAGAGTGCCGTAGTTTTGAGGAAGATGTAGCACAAAATTCTGCAAGGAAGGCAGCTTCAAGAGAAACCGGTTATGACAACTTTTTGTACTGTCCAGATGCTGATGAAACCGGAGAAACAACATTTGAGCATTTCCAAAGACACTGGATAAGGGGTGAACCTGTTATAGTTAGGAATGCGTATAAAAAGGCTAGTGGTCTTAGCTGGGACCCAATGGTGATGTGGAGAGCTTTTATGGGGGCAAGGAAAATATTAAAAGAGGATGCCGTTAATTTTAAAGCCATTGATTGCTTGGACTGGTGCGAGGTAGAAATTAACGCCTTTCAGTTCTTCAAAGGATACTTGGAAGGTCGTAGATACAGAAATGGATGGCCAGCTATGCTGAAGCTAAAGGATTGGCCTCCATCAAATTTTTTTGAAGAGTGTTTGCCAAGGCATGGTGCTGAGTTTATAGCGATGCTTCCTTTTAGTGATTATACACATCCCAAATCCGGTATTTTAAACCTGGCCACTAAGCTCCCTGCTGTTTCGAAGCCTGATTTGGGTCCTAAAACATACATTGCTTATGGAACTTCAGACGAGTTGAGTAGAGGTGATTCTGTGACAAAATTACACTGTGACATTTCAGATGCGGTCAATATTCTGACACACACTGCTGAGGTAAAGCCACCCCCATGGCAATCCAGAATCATTAAAAAGTTACGAAAGAAATATGAAGATGAAGATATGCGTGAGCTCTACAGTCGGGACAAAAAGGAAGTTGGTTTACCTAGAAAAAGAGGCAGAAAGCGTCGCGTAGGTTTTAGCGTGGATCCTAAAACTTCTGAAAAAGAAGACACTAGTGGTAGAGACTCAACCTTGCAAGGAAGTCAAGGAAAAGAAGAGAAACTTGATGAACAAGAATCCTCAGAACCCACCAAAATTGAATTCGATTTAAATGCCTGCGAGCAGGAAATCTTCGATTCCCCTAGGTTTCAGCAATTTGACCTCAATAGTCACGACTCCAGTTTATTGGTTCCTGGTAACGATTGTGAGTCGATGCATTATGATAATGTGCAGCAAAGGTGCTCATCACGAGGTGATGAATCTTATAAAGAAATTTCATCAGTGATGGATGATCAACCTTGTAGTGAAACAAAAGAAACAACAGTCTTCAACAGATTAAATTCTCCAGATGACTTCTGTTCTGATATTGAGATTAACAATATAGATTCAGCCGAAAAGGATATTTTGAGTAATAATTCATGTCAAAATGATGTTCATTTGGGGACTCAAAATGGGAGTGCTGTATGGGACATATTCCGCAGGCATGATGTTCCCAAGCTAACAGAATATCTAAAGAAACACCATAGAGAGTTTCGCCACATAATTAGTCTTCCGGTGAATTCTGTGATTCATCCCATTCATGACCAGATCCTTTATTTAAATGAGAAGCATAAAAAGCAGCTAAAAATAGAATATGGTGTTGAACCATGGACGTTCGAGCAACATCTTGGGGAGGCTGTTTTCATACCTGCAGGATGCCCACATCAAGTGAGAAATAGAAAGTCTTGCATAAAAGTGGCTATGGACTTCGTTTCGCCTGAGAATGTTCGAGAATGTGTTCAATTGACAGAGGAATTTCGATTACTTCCGAAAAACCATAGTTCTAAGGAAGATAAATTGGAGATAAAGAAGATGGCACTTTATGCTGCTGATGTTGCTGTTGCTGAAGCCAATAAACTCTTGGGAGCTAAATGA 4896 0.415 MDVGGDGEFGRCNRNGSEWRCKERALPGNLQCEKHALERKKNRKESSSGRKRKAEESSLNGVLVVDDDGGEGLFDGGDGGIFAEGEVNGGVNLGIGSESFNLWQQGEGQQLEVFGEGSGNLGKFLGDGVEFLGGFVEDRNVVGLGQPWSSVGVFGNAGGVAGVVKEDHGNRVGGVCRNDSLGFHSQGIQGLIGEEEAGFGNLYDRSFQALLCQGKVCDEDVNLIGGAPGFQGLVGESAYDFRGEVGEGVGNLSQHDGKFGGEKNVGNILEAPSSSDKMKAIGVEEGMELLPSGGVSTNEEARPEVLKPLTNRGGRPKGSKNKKKKGVSLVLDGEAVCGSDNAGTVGMGTVEVLENEKSVFCGKSDGEGVDMGEIERTRECSPPQNQKCTREIVSAPGYEVAGVGEISRPLNKEKNVKEVSSEVAVKIARPKKRGRPKGSTNKKVTRSASSKEGAGDIAIQGSEEKILIVPYQKDADEFASLTNKLGSTEFEGYKHPGMSSNVRLEENDGTASGLEITTLAPLCETEKGIPFESAKHIENLTTPPIVKRGRPKGSKNKKKTPADQEHIGHGGDIIKLIGMENYEATAVSVGDQELVVQTLGQDEVENVKPKMGRPKGSKNKKKNIDGEAENELHKEKKKPARPKGSGEKQKETGNEKIAKGLVSESSNVHKIKRRGRPKGSGKKQKENASRLDAEIECEKNRCVDGILSTTMPHKHIHEESILLLEDQVNKKDEADFVLECTKESGIEKVANGLVSESDNVHKTQDVEVADIFYEKEVKETIDHGLESSDMMGDCETKKEPRNSRCHQCWKKSRTGLVVCSKCKKKKYCYECIAKWYQDKTREEIETACPFCLDYCNCRMCLKKAISTMNGNDEADRDVKLRKLFYLLKKTLPLLQDIQREQRYELEVEASMHGSQLVEEGDIRKAEVDDDDRVYCDNCNTSIVNFHRSCSNPNCQYDLCLTCCTELRLGVHCEDIPASGNEEMVDAPPESIPWRAETNGSIPCPPEARGGCGIAILSLRRLFEANWIDKLTRGVEELTVKYQPPIIDLSLGCSECRSFEEDVAQNSARKAASRETGYDNFLYCPDADETGETTFEHFQRHWIRGEPVIVRNAYKKASGLSWDPMVMWRAFMGARKILKEDAVNFKAIDCLDWCEVEINAFQFFKGYLEGRRYRNGWPAMLKLKDWPPSNFFEECLPRHGAEFIAMLPFSDYTHPKSGILNLATKLPAVSKPDLGPKTYIAYGTSDELSRGDSVTKLHCDISDAVNILTHTAEVKPPPWQSRIIKKLRKKYEDEDMRELYSRDKKEVGLPRKRGRKRRVGFSVDPKTSEKEDTSGRDSTLQGSQGKEEKLDEQESSEPTKIEFDLNACEQEIFDSPRFQQFDLNSHDSSLLVPGNDCESMHYDNVQQRCSSRGDESYKEISSVMDDQPCSETKETTVFNRLNSPDDFCSDIEINNIDSAEKDILSNNSCQNDVHLGTQNGSAVWDIFRRHDVPKLTEYLKKHHREFRHIISLPVNSVIHPIHDQILYLNEKHKKQLKIEYGVEPWTFEQHLGEAVFIPAGCPHQVRNRKSCIKVAMDFVSPENVRECVQLTEEFRLLPKNHSSKEDKLEIKKMALYAADVAVAEANKLLGAK 1631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04363 1631 MobiDBLite consensus disorder prediction 291 325 - -
Vifa3g04363 1631 MobiDBLite consensus disorder prediction 1319 1357 - -
Vifa3g04363 1631 Coils Coil 37 57 - -
Vifa3g04363 1631 SMART cupin_9 1195 1594 IPR003347 -
Vifa3g04363 1631 ProSiteProfiles JmjC domain profile. 1202 1594 IPR003347 -
Vifa3g04363 1631 MobiDBLite consensus disorder prediction 429 456 - -
Vifa3g04363 1631 MobiDBLite consensus disorder prediction 1308 1357 - -
Vifa3g04363 1631 ProSiteProfiles WRC domain profile. 6 51 IPR014977 -
Vifa3g04363 1631 Pfam JmjC domain, hydroxylase 1462 1577 IPR003347 -
Vifa3g04363 1631 CDD cupin_RmlC-like 1507 1566 - -
Vifa3g04363 1631 MobiDBLite consensus disorder prediction 606 657 - -
Vifa3g04363 1631 MobiDBLite consensus disorder prediction 36 58 - -
Vifa3g04363 1631 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 803 865 IPR018866 -
Vifa3g04363 1631 MobiDBLite consensus disorder prediction 542 568 - -
Vifa3g04363 1631 Gene3D Cupin 1080 1334 - -
Vifa3g04363 1631 Gene3D Cupin 1416 1603 - -
Vifa3g04363 1631 ProSiteProfiles Zinc finger RING-type profile. 805 851 IPR001841 -
Vifa3g04363 1631 MobiDBLite consensus disorder prediction 36 57 - -
Vifa3g04363 1631 SUPERFAMILY Clavaminate synthase-like 1093 1627 - -
Vifa3g04363 1631 MobiDBLite consensus disorder prediction 605 690 - -
Vifa3g04363 1631 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 441 1628 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04363 Vifa-Chr3 1248050206 1248059936 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa3g04363 JmjC 3.8e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04363 K15601 - lang:109335468 1192.56