Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04358 ATGGGAAGAAAAGGAGGAAGCTCCAGACAAAAAGAAGAAAACCGAGAGAAATTGGGGAATGAAGTAGCAGAGGAGGTGTCATTTGAGCATTTTCCTGCTGAGAGTTCGCCCGATGATGTAACCAATGAGGAGAGTACAACATCAACTCCTGCACGAGACGATAGAACTCACGCGATTGCTGTTGCAGAAGCCACTGCAGCAGCTTCTGCTGCTGCTGTTGCAGCTGCTCAAGCAGCTGCTAGAGTTGTACGATTGGCCGGCTATGGACGCTATAACAAGGAAGAGAGAGCAGCAACATTCATTCAATCACACTACAGAGGATACCTAGCTCGACGTGCTTTGCGCGCGTTGAAGGGGTTAGTGAGGCTGCAAGCATTAGTGAGGGGACACAATGTGCGGAAGCAGGCTCAAATGACAATGCGGTGTATGCAAGCGTTGGTACGGGTGCAGGCGCGAGTGAGAGCGCGACGACTTCAGTTGAGCCACGAGAGTTTTGAGAAGGAAATGGATGAATATGAAGAAGAAGAATTTGTGAGACAACAAGAGAGGACTTCAACTAAGCCTATGAGTCCTATGAGAAGATCATCAGGCATTAATAATAATAACAATAATAATGGTTTGGATCATAACAAACGTCAAAGTAGCAAAAAAGCTAAAGAAAGTGATTTGAAAAAACATGAAGCTGCAATGAAGAGGGAAAGAGCTCTTGCATATGCTTTCAATTATCAACAGCAACAGCAAAAGCAACATCTACTACGTAGAGATAAAAATGGTGAAGATGATGTTGATATGAGAAGCTATAATCCTAATGATAAAAATGAAAAAGCCCAATGGGGTTGGAATTGGTTGGAGCGTTGGATGTCATCTCAACCCTACAATGCAAGACACTTAGGACAACGTGAAACCTCTTACATGACACTCCCTTCAACAACATCAACAACAACAGATAACATGTCTGAAAAAACCGTTGAAATGGACATGGTTGCAACACCAAGTAGGAACAATTTCAATATGGGCTTAATGGGCCAAGATTTTCATGATGCAAGCCCAGCTTTCAATAGGGTCCATCAAAGACCACCAAGCCCGGGCCGACCTAGTTACATGGCCCCAACTCAATCTGCTAAGGCTAAGGTTCGGGTTGAAGGCCCATTTAAGCAGATGGTTTCATCTGGGCCTTATTGGAACACGTCTACGAAGGGAGGATCTGTTATTGGATCGGGCTGTGACTCGTCTAGCTCGGGTGGTGGAACGGCTACTTATCAGGCCCCGAGAAGCCCGGGCCCGAGAGTTAACGGTGTTCGTTCGCAGTCTAACCGGATTGTGGGTAGTAGTCAAGAGTATGTTGAGGATTGGGCCCTTCCACTTGGAGCCCATGGTTGGGCTTAA 1386 0.4596 MGRKGGSSRQKEENREKLGNEVAEEVSFEHFPAESSPDDVTNEESTTSTPARDDRTHAIAVAEATAAASAAAVAAAQAAARVVRLAGYGRYNKEERAATFIQSHYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRLQLSHESFEKEMDEYEEEEFVRQQERTSTKPMSPMRRSSGINNNNNNNGLDHNKRQSSKKAKESDLKKHEAAMKRERALAYAFNYQQQQQKQHLLRRDKNGEDDVDMRSYNPNDKNEKAQWGWNWLERWMSSQPYNARHLGQRETSYMTLPSTTSTTTDNMSEKTVEMDMVATPSRNNFNMGLMGQDFHDASPAFNRVHQRPPSPGRPSYMAPTQSAKAKVRVEGPFKQMVSSGPYWNTSTKGGSVIGSGCDSSSSGGGTATYQAPRSPGPRVNGVRSQSNRIVGSSQEYVEDWALPLGAHGWA 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04358 461 PANTHER IQ-DOMAIN 5-RELATED 25 393 - -
Vifa3g04358 461 SMART iq_5 116 137 IPR000048 GO:0005515
Vifa3g04358 461 SMART iq_5 93 115 IPR000048 GO:0005515
Vifa3g04358 461 Gene3D - 95 136 - -
Vifa3g04358 461 MobiDBLite consensus disorder prediction 171 227 - -
Vifa3g04358 461 MobiDBLite consensus disorder prediction 1 32 - -
Vifa3g04358 461 MobiDBLite consensus disorder prediction 404 435 - -
Vifa3g04358 461 ProSiteProfiles IQ motif profile. 118 145 IPR000048 GO:0005515
Vifa3g04358 461 MobiDBLite consensus disorder prediction 249 270 - -
Vifa3g04358 461 MobiDBLite consensus disorder prediction 404 420 - -
Vifa3g04358 461 ProSiteProfiles IQ motif profile. 94 122 IPR000048 GO:0005515
Vifa3g04358 461 Pfam Protein of unknown function (DUF4005) 356 392 IPR025064 -
Vifa3g04358 461 MobiDBLite consensus disorder prediction 210 227 - -
Vifa3g04358 461 Coils Coil 155 175 - -
Vifa3g04358 461 Coils Coil 216 236 - -
Vifa3g04358 461 Pfam IQ calmodulin-binding motif 121 136 IPR000048 GO:0005515
Vifa3g04358 461 Pfam IQ calmodulin-binding motif 95 115 IPR000048 GO:0005515
Vifa3g04358 461 MobiDBLite consensus disorder prediction 1 55 - -
Vifa3g04358 461 MobiDBLite consensus disorder prediction 183 209 - -
Vifa3g04358 461 MobiDBLite consensus disorder prediction 245 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04358 Vifa-Chr3 1246766367 1246769248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04358 20 429 IQD Protein Family AT3G49260 50.708 2.24e-98 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04358 - - gmx:100798026 481.485