Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04343 ATGGCTTCGTCTTCCTCTTCCTCACCAACAACAACATTGAGCCGGAGAAGAACACAAGCCCCGATTCCAGCTCCCAAGAAACTCTCTAGCTTCGACGACGTCGTTTGCCAGAAATGCAGCTCCGGCAAATCTCCGACCAAGTTGCTCCTCTGCGACAAATGCGATAAAGGCTATCACATCTTCTGCCTCTCACCTATCCTTGCTAAAGTCCCCAAATCGTCGTGGTTCTGTCCATCTTGCTCCCACACCACTTCCAACAACCCTAAATCTTTTCCTCTTGTACAGACCAAGATTATTGATTTCTTCAAAATCCAACGGTCTTCTGAAGCAGCTCAGATTCTGAATCAAGATTTGAAAAAGAAGAGAAAGAGGGGTAGTGGTTTAGTGGTTTCGAAGAAGAAAAGGAAGCTGTTGGCATTTACTCCGATTGATGATTCTAGGAGGAGGTTAGTGCAGATGGCTTCACTGGCAACTGCGCTGACTGCAACTAAGACGGAGTTTAGTAACAAGCTTACTTATATGCCTGGAATGGCACCAAGGGATGCTAATTCTCCTGCTCTTGAACATGGTGGAATGCAGGTCATGTCAAAAGAAGACATTGAAACCCTTAACTTGTGCAGAAGTATGATGGAAAGAGGAGAATGTCCACCTCTCATGGTTGTTTTTGATCCTGTAGAAGGCTTTACTGTAGAAGCAGACCAATCCATCAAAGATTTGACAATAATAACAGAATATGTTGGAGATGTAGATTTTTTAAAGAATCGGGAATATGATGATGGGGATAGCATTATGACACTTCTTTTTGCTTCTAATCCTTCACAATCGCTGGTCATCTGCCCAGATAAACGCAGCAACATAGCACGATTTGTTAATGGCATCAACAATCACACACCTGAAGGAAAAAAGAAGCAAAACTTGAAATGTGTGAGATTTAATGTGGATGGTGAATGTCGGGTCCTTTTAATTGCTATTAGAGATATAGCTAAGGGGGAAAGGCTGTACTATGACTACAATGGATATGAGCATGAATATCCAACTGAACACTTTGTCTAA 1053 0.4245 MASSSSSSPTTTLSRRRTQAPIPAPKKLSSFDDVVCQKCSSGKSPTKLLLCDKCDKGYHIFCLSPILAKVPKSSWFCPSCSHTTSNNPKSFPLVQTKIIDFFKIQRSSEAAQILNQDLKKKRKRGSGLVVSKKKRKLLAFTPIDDSRRRLVQMASLATALTATKTEFSNKLTYMPGMAPRDANSPALEHGGMQVMSKEDIETLNLCRSMMERGECPPLMVVFDPVEGFTVEADQSIKDLTIITEYVGDVDFLKNREYDDGDSIMTLLFASNPSQSLVICPDKRSNIARFVNGINNHTPEGKKKQNLKCVRFNVDGECRVLLIAIRDIAKGERLYYDYNGYEHEYPTEHFV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04343 350 FunFam Histone-lysine N-methyltransferase ATXR5 121 350 - -
Vifa3g04343 350 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 107 348 - -
Vifa3g04343 350 Pfam PHD-finger 35 81 IPR019787 -
Vifa3g04343 350 Coils Coil 104 124 - -
Vifa3g04343 350 CDD SET_ATXR5_6-like 213 350 - -
Vifa3g04343 350 ProSiteProfiles Zinc finger PHD-type profile. 33 83 IPR019787 -
Vifa3g04343 350 SUPERFAMILY SET domain 208 338 IPR046341 -
Vifa3g04343 350 SUPERFAMILY FYVE/PHD zinc finger 30 84 IPR011011 -
Vifa3g04343 350 CDD PHD_RSF1 36 80 - -
Vifa3g04343 350 Pfam SET domain 263 338 IPR001214 GO:0005515
Vifa3g04343 350 ProSitePatterns Zinc finger PHD-type signature. 36 80 IPR019786 -
Vifa3g04343 350 MobiDBLite consensus disorder prediction 1 26 - -
Vifa3g04343 350 ProSiteProfiles SET domain profile. 216 338 IPR001214 GO:0005515
Vifa3g04343 350 SMART PHD_3 35 81 IPR001965 -
Vifa3g04343 350 Gene3D SET domain 122 350 IPR046341 -
Vifa3g04343 350 MobiDBLite consensus disorder prediction 1 18 - -
Vifa3g04343 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 99 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04343 Vifa-Chr3 1242927933 1242930208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04343 20 99 C2H2 Transcription Factor Family AT3G01460 29.630 4.61e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa3g04343 PHD 6e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04343 K24406 - gmx:100775247 526.939