Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04305 ATGGTAGATGCCTCTCTAGGAGAAATAATGACAACATGTGAGAAGATCAATTGGCTACTGTCAGAGGGTGAACAATGTCTGAAACCTGAGTACAGATCCTCTGGAAGAGCAATGCTTCATAAAAGACCCAGAGTAGAATTTCACCCCCTTGGAGTTATTGGGGCCATTGTGTCATGGAACTATCCCTTCCATAATATTTTTAACCCTATGCTAGCAGCAGTTTTTTCTGGAAATGGCATTGTGATTAAGATATCAGAACATGCAAGTTGGTCTGGATGCTTTTACTTCCGGATCATCCAATCAGCCCTTGCTGCCATAGGAGCTCCAGAGGACCTTGTTGAGGTGATAACAGGGTTTGCTGAAACAGGAGAAGCACTGGTGTCTTCTGTTGATAAAGTAATTTTTGTTGGATCTCCTGGGGTTGGTAAGATGATAATGAAAAATGCTGCTGAGACACTTATACCAGTTACACTAGAGCTTGGTGGAAAAGATGCATTTATTGTTTGTGAAGATGTAGATATGGATCATGTTGCTCAAATTGCTGTCAGGGCTTTTCTTCAGTCAAGTGGGCAGAACTGCGCTGGAGCTGAACGATTTTATGTCCATAGGAACATTTATCCATCTTTTGTCAGCAAAATTACCAAAATCATAAAATCTGTTACGGCTGGTCCACCACTTGCTGGGAAGTATGATATGGGAGCTTTATGCATGCATGAGCATTCTGAAAAGCTTGAAGGTCTTGTAAATGACGCTTTAGACAAAGGAGCTGAAATTGTTGCTCGTGGAAGTTTTGGACATATAGAAGAGGCATTTGGACCTATCATGCCAATAATGAAGTTTAGCTCTGATGAAGAAGTTATCAAGCTTGCTAATGACTCAAAATATGGGCTCGGCTGTGCTGTTTTCTCAGGAAGTCAAAGTCATGCCCGAGAGATAGCTTCTCATATACATTGTGGGGTGGCTGCAGTTAATGATTTTGCATCAAATTACATGTGTCAGTCCCTGCCTTTTGGGGGAGTGAAACACAATGGATTTGGACGTTTTGGTGGTGTGGAAGGCCTGCGAGCATGCTGCCTTGAGTCACTCGTTGAAGCACTATATGGGCTTAGCATATGGGATCGTTTGCAAGCATTGGTAACCGTTTTGAAAATGCTTACCGAGCAGAATAAGAAGGAGAAATGA 1182 0.423 MVDASLGEIMTTCEKINWLLSEGEQCLKPEYRSSGRAMLHKRPRVEFHPLGVIGAIVSWNYPFHNIFNPMLAAVFSGNGIVIKISEHASWSGCFYFRIIQSALAAIGAPEDLVEVITGFAETGEALVSSVDKVIFVGSPGVGKMIMKNAAETLIPVTLELGGKDAFIVCEDVDMDHVAQIAVRAFLQSSGQNCAGAERFYVHRNIYPSFVSKITKIIKSVTAGPPLAGKYDMGALCMHEHSEKLEGLVNDALDKGAEIVARGSFGHIEEAFGPIMPIMKFSSDEEVIKLANDSKYGLGCAVFSGSQSHAREIASHIHCGVAAVNDFASNYMCQSLPFGGVKHNGFGRFGGVEGLRACCLESLVEALYGLSIWDRLQALVTVLKMLTEQNKKEK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04305 393 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 268 343 IPR016163 GO:0016620
Vifa3g04305 393 Pfam Aldehyde dehydrogenase family 5 262 IPR015590 GO:0016491
Vifa3g04305 393 Pfam Aldehyde dehydrogenase family 268 358 IPR015590 GO:0016491
Vifa3g04305 393 SUPERFAMILY ALDH-like 5 356 IPR016161 GO:0016491
Vifa3g04305 393 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 5 358 - -
Vifa3g04305 393 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 158 165 IPR029510 GO:0016491
Vifa3g04305 393 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 4 165 IPR016162 GO:0016491
Vifa3g04305 393 Coils Coil 382 393 - -
Vifa3g04305 393 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 344 356 IPR016162 GO:0016491
Vifa3g04305 393 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 166 263 IPR016163 GO:0016620
Vifa3g04305 393 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 186 197 IPR016160 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04305 Vifa-Chr3 1235906308 1235907664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04305 1 389 Aldehyde Dehydrogenase Gene Family AT3G66658 71.141 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04305 - - gmx:100802990 701.819