Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04304 ATGAGTAAGCTTCTAATTCCATGCCATGCCAAAGTTCTTCATCTTCAGTGCTATGAGCCTGCTACCATGAAATATTTGGGATATGTTCCTGCTTTGACACCAGATGAGGTCAAGGAGCAAATTGAAAAATATATAATTAAACATCAAGCACTAATTTGCGAGATATCGTCACGTGATAATGGAAAAACAATGGTAGATGCCTCTCTAGGAGAAATAATGACAACATGTGAGAAGATCAATTGGCTACTGTCAGAGGGTGAACAATGTCTGAAACCTGAGTACAGATCCTCTGGAAGAGCAATGCTTCATAAAAGACCCAGAGTAGAATTTCACCCCATTGGAGTTATTGGGGCCATTGTGTCATGGAACTATCCCTTCCATAATATTTTTAACCCTATGCTAGCAGCAGTTTTTTCTGGAAATGGCATTGTGATTAAGATATCAGAACATGCAAGTTGGTCTGGATGCTTTTACTTCCGGATCATCCAATCAGCCCTTGCTGCCATAGGAGCTCCAGAGGACCTTGTTGAGGTGATAACAGGGTTTGCTGAAACAGGAGAAGCACTGGTGTCTTCTGTTGATAAAGTAATTTTTGTTGGATCTCCTGGGGTTGGTAAGATGATAATGAAAAATGCTGCTGAGACACTTATACCAGTTACACTAGAGCTTGGTGGAAAAGATGCATTTATTGTTTGTGAAGATGTAGATATGGATCATGTTGCTCAAATTGCTGTCAGGGCTTTTCTTCAGTCAAGTGGGCAGAACTGCGCTGGAGCTGAACGATTTTATGTCCATAGGAACATTTATCCATCTTTTGTCAGCAAAATTACCAAAATCATAAAATCTGTTACGGCTGGTCCACCACTTGCTGAGAAGTATGATATGGGAGCTTTATGCATGCATGAGCATTCTGAAAAGCTTGAAGGTCTTGTAAATGACGCTTTAGACAAAGGAGCTGAAATTGTTGCTCGTGGAAGTTTTGGACATATAGAAGAGGAATTTGAACCTATCATGCCAATAATGAAGTTTAGCTCTGATGAAGAAGTTATCAAGCTTGCTAATGACTCAAAATATGGGCTCGGCTGTGCTGTTTTCTCAGGAAGTCAAAGTCATGCCCGAGAGATAGCTTCTCATATACATTGTGGGGTGGCTGCAGTTAATGATTTTGCATCAAATTACATGTGTCAGTCCCTGCCTTTTGGGGGAGTGAAACACAGTGGATTTGGACGTTTTGGTGGTGTGGAAGGCCTGCGAGCATGTTGCCTTGTAAAATCAGTTGTTGAAGATAGATGGTGGCCATTCATCAAGACAAAAATACCTAAGCCTATTCAGTATCCCGTGGCAGAAAATGGATTTGAGTTTCAGGAGTCACTCGTTGAAGCACTATATGGGCTTAGCATATGGGATCGTTTGCAAGCATTGGTAACCGTTTTGAAAATGCTTACCGAGCAGAATAAGAAGGAGAAATGA 1470 0.4109 MSKLLIPCHAKVLHLQCYEPATMKYLGYVPALTPDEVKEQIEKYIIKHQALICEISSRDNGKTMVDASLGEIMTTCEKINWLLSEGEQCLKPEYRSSGRAMLHKRPRVEFHPIGVIGAIVSWNYPFHNIFNPMLAAVFSGNGIVIKISEHASWSGCFYFRIIQSALAAIGAPEDLVEVITGFAETGEALVSSVDKVIFVGSPGVGKMIMKNAAETLIPVTLELGGKDAFIVCEDVDMDHVAQIAVRAFLQSSGQNCAGAERFYVHRNIYPSFVSKITKIIKSVTAGPPLAEKYDMGALCMHEHSEKLEGLVNDALDKGAEIVARGSFGHIEEEFEPIMPIMKFSSDEEVIKLANDSKYGLGCAVFSGSQSHAREIASHIHCGVAAVNDFASNYMCQSLPFGGVKHSGFGRFGGVEGLRACCLVKSVVEDRWWPFIKTKIPKPIQYPVAENGFEFQESLVEALYGLSIWDRLQALVTVLKMLTEQNKKEK 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04304 489 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 221 228 IPR029510 GO:0016491
Vifa3g04304 489 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 39 426 - -
Vifa3g04304 489 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 229 326 IPR016163 GO:0016620
Vifa3g04304 489 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 398 426 IPR016162 GO:0016491
Vifa3g04304 489 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 249 260 IPR016160 GO:0016491
Vifa3g04304 489 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 39 228 IPR016162 GO:0016491
Vifa3g04304 489 Pfam Aldehyde dehydrogenase family 331 426 IPR015590 GO:0016491
Vifa3g04304 489 Pfam Aldehyde dehydrogenase family 39 325 IPR015590 GO:0016491
Vifa3g04304 489 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 331 397 IPR016163 GO:0016620
Vifa3g04304 489 SUPERFAMILY ALDH-like 15 428 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04304 Vifa-Chr3 1235891409 1235893031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04304 15 485 Aldehyde Dehydrogenase Gene Family AT3G66658 73.321 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04304 - - gmx:100797873 853.203