Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04302 ATGCCTCCTCAACTCCGAACCAGAAGAACCAAACAACAAAACCCAAACCCGGACCCGAATCACAACCCGATCACAAAACCCGAAACCGCTCGCGGTAGAAGAGGTAGACCAGCGAGAAACCGCAACGTCACTTTCGCGCGTGATGATCGAATCAATAACCGTTTGTTTCTGAACAATAACGAAGAACAAAACGAACCTCACGTGACTCCGGCTAGGTTTTGTGGGGATATTAAGCAGGATATTATGGATGATCACTGTAATAGCGGTGGTCGGAGCCCCGGGAAAGCTCCGGTAGCTGAAGAGGAAGGGAGTACACCTCCCATTCCTGAAAAAGTTCAAGTAGGTGGTTCACCGTTGTATAGAGTAGATAGGAAGCTTGGGAAAGGAGGGTTTGGACAAGTTTATGTAGGTCGCCGTGTCGGTGCCGGAGCAGGAGCTCTTGAGGTAGCTCTGAAGTTTGAGCATAAAAGCAGTAAAGGGTGTAATTATGGACCTCCTTCCGAGTGGCAGGTTTACAATGTATTAGGCGGTAGTCATGGTGTCCCACGAGTTCATTACAAGGGACGGCAAGGTGATTTCTATATTATGGTCATGGATATTCTTGGCCCTAGTTTGTGGGATGTATGGAATAACAAGACACACACGATGTCTGCTGAAATGGTGGCATGTATAGCAATCGAGGCTGTCTCCATATTAGAGAAGATGCATTCTAGAGGATACGTGCATGGTGATGTAAAACCAGAGAACTTTTTGCTTGGTTGTCCGGGAACTCATGAAGAGAAAAAGCTTTTTCTGGTTGATCTTGGATTAGCGTCCCGTTGGCGTGATAATTCGACTGGTCTCCACGTTGAGTATGATCAACGCCCAGATGTCTTTAGGGGAACGGTTCGTTATGCTAGTGTACATGCTCATCTTGGTAGGACAGGTAGCAGAAGGGATGATTTAGAATCTCTTGCTTACACACTAATTTTCCTTCTTCGTGGACGGCTACCTTGGCAAGGATACCAGGGAGAAAATAAAGGATTTCTCGTCTGCAAGAAGAAAATGGCCACCTCACCAGAAAATATGTGTATCCTTTGTCCTGCACCTTTTCGGCAGTTTATTGAGTACGTAGTGAATTTGAAGTTTGACGAAGAACCAAATTATGCCAAGTACATATCACTTTTCGATGGAATTGTTGGTCCAAATCCAGACATTAGACCCATAAACACTGATGGTGCACTGAAGCTTATATATCAGGTTGGACAGAAGAGAGGACGATTGACCATGGGAGAAGATGATGATGAGCAGCCAAAGAAGAAAGTTAGAGTGGGAATGCCAGCAACCCAATGGATTAGTGTGTACAGTGCACGCCGGCCTATGAAGCAAAGGTACCATTATAATGTTACTGATATACGGTTGTCCCAACACATTGAGAAGGGGTATGAAGATGGGTTGTTTATCAGTAGTGTAGCTTGTTGTTCTAACCTTTGGGCACTGATTATGGATGCCGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCATCCCACTTTCTTCACAAGGAATGGATTATGGAACAGTGGGAAAGAAATTATTACATTAGTGCCATAGCAGGATCTAATAGTGGGAGCTCGTTGGTTGTAATGTCGAAAGGGACCCAATACTTGCAGCAATCTTACAAGGTCAGTGAATCATTTCCATTCAAGTGGATTAATAAAAAATGGAAAGAAGGATTTTTTGTCACTGCTATGGCCACTTCTGGAAGTAGATGGGCAATTGTTATGTCTCGTGGTGCTGGATTTTCAGATCAGGTCGTGGAGCTTGATTTCCTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGACAACGGTTACCGCATCACTTCAACTGCTGCTACATATGACCAGGCTGCTTTTATTCTTAGTATTCCAAGAAAAAAACTGGCTGATGAAACTCAAGAAACACTCCGTACATCTGACTTTCCTAGTACTCATGTCAAGGAGAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGAAGAACAGTTTGA 2040 0.4417 MPPQLRTRRTKQQNPNPDPNHNPITKPETARGRRGRPARNRNVTFARDDRINNRLFLNNNEEQNEPHVTPARFCGDIKQDIMDDHCNSGGRSPGKAPVAEEEGSTPPIPEKVQVGGSPLYRVDRKLGKGGFGQVYVGRRVGAGAGALEVALKFEHKSSKGCNYGPPSEWQVYNVLGGSHGVPRVHYKGRQGDFYIMVMDILGPSLWDVWNNKTHTMSAEMVACIAIEAVSILEKMHSRGYVHGDVKPENFLLGCPGTHEEKKLFLVDLGLASRWRDNSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPENMCILCPAPFRQFIEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGALKLIYQVGQKRGRLTMGEDDDEQPKKKVRVGMPATQWISVYSARRPMKQRYHYNVTDIRLSQHIEKGYEDGLFISSVACCSNLWALIMDAGTGFTAQVYELSSHFLHKEWIMEQWERNYYISAIAGSNSGSSLVVMSKGTQYLQQSYKVSESFPFKWINKKWKEGFFVTAMATSGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDNGYRITSTAATYDQAAFILSIPRKKLADETQETLRTSDFPSTHVKEKWAKNLYIASICYGRTV 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04302 679 MobiDBLite consensus disorder prediction 27 42 - -
Vifa3g04302 679 MobiDBLite consensus disorder prediction 1 42 - -
Vifa3g04302 679 CDD STKc_CK1 120 389 - -
Vifa3g04302 679 PANTHER CASEIN KINASE-RELATED 120 643 - -
Vifa3g04302 679 ProSitePatterns Protein kinases ATP-binding region signature. 126 152 IPR017441 GO:0005524
Vifa3g04302 679 Pfam Protein kinase domain 120 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04302 679 SMART serkin_6 120 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04302 679 ProSiteProfiles Protein kinase domain profile. 120 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04302 679 MobiDBLite consensus disorder prediction 1 19 - -
Vifa3g04302 679 FunFam casein kinase 1-like protein HD16 93 436 - -
Vifa3g04302 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Vifa3g04302 679 MobiDBLite consensus disorder prediction 83 111 - -
Vifa3g04302 679 Gene3D Transferase(Phosphotransferase) domain 1 99 415 - -
Vifa3g04302 679 SUPERFAMILY Protein kinase-like (PK-like) 120 395 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04302 Vifa-Chr3 1235553444 1235557480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04302 120 275 EF-hand Containing Proteins AT1G35670 29.375 3.74e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vifa3g04302 Pkinase 3.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04302 - - rcu:8275677 1103.58