Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04298 ATGGAGGGAACAAACAACATTTTCCAAACAACCTTTTGCCCACAAACCCCCTCAAACAACAATGCTGAGACTAATAACACTTCCACCACGGCAGCAGACCAATTTATTGTTGAGGACCTCCTTAACCTCTCATTCGACGATGCTGACATTATTTATGATGCCAGCATCCTCGACTCCGCCACTGGGAACTCAACAGCCTCATCCTCCACAGCTGCTGTCGCCAATAGCTGTAACTCCTCGTCATTTTCCGGGTTTGACCCCAATCTTATTCCCGATAATGGCTGGCAGAATAATATCTCTGACTGCCATTTCTCCGGAGACCTTTGTGTTCCGGAGGATGATTTAACAGATGCGGGTTGGCTTACCAATATCGTGGATGATTCGTTTTCGGGTGAGGAACTTGAAAAGATGCAACTGATATCAGGCATGAAGGTGCAAAACAAGGACGCAGAGGCCCGTGAGGTTTCCCAGCTCGGCCGAAACAGCCCAATTTTTGATAATGAAGTGTCGGTCCCAGCTAAGGCCCGTAGCAAGAGGACGCGTCAGCCCCCTTGCGACTGGACCTCGCGTCTTCTTCTTCTTTCTGAAGCGGCCTCGTCTTCTTATGAGCCAGAACTCCTTATACCTACTCCAACCCTACCCTCCGTCACAGTTCCAAAGAAGCAGGCAAAGACTGCTCCAAGAAGAAAGGACAATTGTGACGGAGGGTCAGGTGGGGATGGTCGCAGATGTCTGCATTGTGCAACGGACAAAACGCCCCAGTGGCGAACTGGGCCTAAAGGCCCAAAGACTTTATGCAATGCGTGTGGCGTGAGATACAAGTCAGGCCGGTTGGTGCCCGAATACAGACCCGCAGCAAGCCCAACATTTGTGATGACCAAACACTCTAACTCGCATCGAAAAGTGTTGGAACTACGGAGACAGAAGGAAATGTTGCAGACCCATCCACACCAACATAACCAGTTCTTACAACATCAGAATATCATGTTTGATATGACGCCCAACGCTGACGATTATTTGATTCATCAACATGTCGGGCCAGATTTTAGACATCTGCTCTAA 1062 0.4906 MEGTNNIFQTTFCPQTPSNNNAETNNTSTTAADQFIVEDLLNLSFDDADIIYDASILDSATGNSTASSSTAAVANSCNSSSFSGFDPNLIPDNGWQNNISDCHFSGDLCVPEDDLTDAGWLTNIVDDSFSGEELEKMQLISGMKVQNKDAEAREVSQLGRNSPIFDNEVSVPAKARSKRTRQPPCDWTSRLLLLSEAASSSYEPELLIPTPTLPSVTVPKKQAKTAPRRKDNCDGGSGGDGRRCLHCATDKTPQWRTGPKGPKTLCNACGVRYKSGRLVPEYRPAASPTFVMTKHSNSHRKVLELRRQKEMLQTHPHQHNQFLQHQNIMFDMTPNADDYLIHQHVGPDFRHLL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04298 353 MobiDBLite consensus disorder prediction 1 26 - -
Vifa3g04298 353 CDD ZnF_GATA 246 290 IPR000679 GO:0006355|GO:0043565
Vifa3g04298 353 Gene3D - 238 315 IPR013088 GO:0006355|GO:0008270
Vifa3g04298 353 FunFam GATA transcription factor 235 321 - -
Vifa3g04298 353 Pfam GATA zinc finger 244 277 IPR000679 GO:0006355|GO:0043565
Vifa3g04298 353 SMART GATA_3 238 288 IPR000679 GO:0006355|GO:0043565
Vifa3g04298 353 MobiDBLite consensus disorder prediction 213 241 - -
Vifa3g04298 353 ProSiteProfiles GATA-type zinc finger domain profile. 238 274 IPR000679 GO:0006355|GO:0043565
Vifa3g04298 353 PIRSF Txn_fac_GATA_plant 18 333 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vifa3g04298 353 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 239 302 - -
Vifa3g04298 353 ProSitePatterns GATA-type zinc finger domain. 244 269 IPR000679 GO:0006355|GO:0043565
Vifa3g04298 353 PANTHER GATA TRANSCRIPTION FACTOR 23 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04298 Vifa-Chr3 1232965159 1232966742 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04298 37 353 C2C2-Gata Transcription Factor Family AT5G25830 47.447 1.25e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa3g04298 GATA 1.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04298 - - psat:127091887 621.698