Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04297 ATGAAAAAGAAAGCTCAATTTTCTTGTTCGTACGTACAAACACTAGTATCAATATTTGCTTCAATTCTTTTCCTTTTCAATCAAAATTGTGTAGCAAAACATCACCAACCATGTCCAACATCATCATGCGGCAAACTAAAAAACATAACATATCCATTCCGTCTCAAAACCGATCCAAACCACTGTGGCGATACAAGGTACGAATTAGATTGCAACGAAAACGGAGCATCATTAACTATGTTTTCTGGTAAATATTATGTTCAACACATTGATTACAAGAGATTTAGAGTTTCATTAAGTGACGCGGGTGTAGTGGAAGACACTAACTGCTCTTTTATTCCACGGCACTTTTTATATGATCGAAGTTTTAACAATGTCCTTTTTGGTGAAGAGGATTTTGGATCTGAGCCGTTCGTTTTGGATCCGATAAATCCAACGAGGATCGCGTATTTTAACTGTTCTAATCCGATAAATGATACACGGTATGTTAAAGTGGACACGAGTCGTTGTAGCATAAAAGGGAATAGTCATGTGTATGCAGTTTTGGAACCCTCTTTGTTTGAGTATAGTGTCGGGGACATTAAGGTTGGGTGTGATTTTATGGTGGCTACGTTGGGAAAGGAACGGACGGAGAATATGAAAGCAAAGGTTTCTTACGATGAGATTCGTGGAATGATGATCAATGGCTTTGAGGTTTCATGGTTGCCTGTGATTTGTGAAAGTCGATGTGGAAAAGGAACAAGTTGTAAGGTTGTTAATGAAGAGAATGGAGAAGTTCAATGTGATAAGCGCTTCTGTCATTATGCATACCAAACAACAGATAAGTGCGAACTTCAGCATCAGATATTCGGTTATACTCGAGCATATCTTAGAGGCATTTTTATTGGACTTGGAAGTAGGATCACATTTAGCACAAGACAATTGGACAATCCAGTTGGACTAGAATATTTTGATGGAGGAATATTGATAGGAAGAAATGTTATACCATTATTCATAGGAGCCAGAGTTCTTTTCGGAGTTATGCTTCTACTTGTGTTATTTATCTATAAATGGAGAAGAAGACATGTATCAATGTATGATAACATTGAAAACTTTTTGTTAGAAAGCAACCTAAACCCGATTAGGTATGAATACAAAGAAATCAAGAAGATGACAGGAGGTTTAAGAGTGAAATTAGGGCAAGGAGGTTTCGGTGCTGTATACAAAGGAAAGCTAAGAAGTGGCCCCGATGTTGCGATAAAGATGTTGACGAAATTCAATGTTAATAACGGACAGGATTTTATTAATGAAGTTGCGACTATTGGAAGAATACATCATGTTAATGTAGTGCGTCTTGTTGGATATTGTGTTGAAGGAAAAAAGAGTGTATTGATCTACGAATTCATGCCGAATGGATCATTGGATAAATACATTTTTCCTAAAGAAGGAATTGTTCCTTTGAGTTACGAAAAAATATATGAAATATCTCTTGGAATAGCTCGTGGGATAGCGTATTTGCATCAAGGTTGTGATATGCAAATTCTTCATTTTGATATCAAGCCTCATAATATTCTTCTAGACGATGATTTTATTCCAAAGGTTTCGGATTTTGGACTTGCAAAACTATATCCCGTGAACGATAGCATTGTCCCGTTAACTGTTGCAAGAGGAACATTGGGTTACATGGCTCCTGAATTGTTCTACAAAAATATTGGTGGAGTGTCTTATAAGGCTGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGGCAGGTAAGAGGAAGAATTGTAACCCTAACGCGGAACATTCAAGTCAATATTACTTCCCGTTTTGGGTTTACGATCAATTTAGAGAAGAGAAAGATAGTGAAATAATGGAAAACGTCTCAAAAGAGGGAATGATATTAGTGAAAAAGATGTTCATGGTTGCACTTTGGTGTATTCAGTTGAAACCAAATGATCGCCCTTCAATGAACAAAGTAGTAGAGATGCTTGAAGGAAACAGCGAAAGCCTTGAATTGCCTCCCAGGCCTTCTTATTATCCAAATGAAAATTATAAACATCATGATGATGTGAACTCTGACCAAACATCATGGAGTGATTCTTCTAGTATTGGCCAAACCTCAACTAATTACTCATTGGACAATGGCTCTTGA 2136 0.3689 MKKKAQFSCSYVQTLVSIFASILFLFNQNCVAKHHQPCPTSSCGKLKNITYPFRLKTDPNHCGDTRYELDCNENGASLTMFSGKYYVQHIDYKRFRVSLSDAGVVEDTNCSFIPRHFLYDRSFNNVLFGEEDFGSEPFVLDPINPTRIAYFNCSNPINDTRYVKVDTSRCSIKGNSHVYAVLEPSLFEYSVGDIKVGCDFMVATLGKERTENMKAKVSYDEIRGMMINGFEVSWLPVICESRCGKGTSCKVVNEENGEVQCDKRFCHYAYQTTDKCELQHQIFGYTRAYLRGIFIGLGSRITFSTRQLDNPVGLEYFDGGILIGRNVIPLFIGARVLFGVMLLLVLFIYKWRRRHVSMYDNIENFLLESNLNPIRYEYKEIKKMTGGLRVKLGQGGFGAVYKGKLRSGPDVAIKMLTKFNVNNGQDFINEVATIGRIHHVNVVRLVGYCVEGKKSVLIYEFMPNGSLDKYIFPKEGIVPLSYEKIYEISLGIARGIAYLHQGCDMQILHFDIKPHNILLDDDFIPKVSDFGLAKLYPVNDSIVPLTVARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGKRKNCNPNAEHSSQYYFPFWVYDQFREEKDSEIMENVSKEGMILVKKMFMVALWCIQLKPNDRPSMNKVVEMLEGNSESLELPPRPSYYPNENYKHHDDVNSDQTSWSDSSSIGQTSTNYSLDNGS 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04297 711 Pfam Wall-associated receptor kinase galacturonan-binding 38 101 IPR025287 GO:0030247
Vifa3g04297 711 FunFam PR5-like receptor kinase 462 669 - -
Vifa3g04297 711 SUPERFAMILY Protein kinase-like (PK-like) 378 690 IPR011009 -
Vifa3g04297 711 MobiDBLite consensus disorder prediction 689 711 - -
Vifa3g04297 711 PANTHER RUST RESISTANCE KINASE LR10-RELATED 359 679 IPR045874 GO:0004672
Vifa3g04297 711 MobiDBLite consensus disorder prediction 661 711 - -
Vifa3g04297 711 FunFam serine/threonine-protein kinase PBS1-like 357 461 - -
Vifa3g04297 711 Pfam Protein kinase domain 391 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04297 711 SMART serkin_6 386 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04297 711 ProSiteProfiles Protein kinase domain profile. 386 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04297 711 Gene3D Transferase(Phosphotransferase) domain 1 462 667 - -
Vifa3g04297 711 Gene3D Phosphorylase Kinase; domain 1 363 461 - -
Vifa3g04297 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 507 519 IPR008271 GO:0004672|GO:0006468
Vifa3g04297 711 ProSitePatterns Protein kinases ATP-binding region signature. 392 414 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04297 Vifa-Chr3 1232795264 1232797769 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04297 39 674 Receptor kinase-like Gene Family AT5G38260 34.526 3.67e-103 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g04297 Pkinase 9.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04297 - - gmx:100820366 1003.05