Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04296 ATGAAACTAAACAAAAATGTCACACTACTATGCACAATTTTATCAGTAACAATATATGCATCTGAACAATCATTTTCTTCATCCTTACCCGGTTGTAAAAACACATGTGGAGACATAAATATTCCATATCCATTTGGTATATCAGAATCATCAACACCAAATCAAGGATCATGTTTTCTAGAGCCCAAATTCAATCTCACATGCGAAAATAACACGAAGTTAATATGGGGTGATGTTCATGTTTTAAACATAAGCATCCTCCAAGGTCAACTCGAACTCTTGTGTTTTGTCTCAAGTTATTGTGACAGAAAAAACAACAACCAACCAACTCTAGACACTGCCAGTTTCAGCATATCAAGAAAGGAAAACAAGTTTATAACTATTGGTTGTGACAATTACGGTTTTATCGACAGCAATTACGACGAAGAAACATATACAACAGGTTGTTTAACAAGATGTAACGGTAATCGAAGGCGAATTGAAAACGGAACGTGTTCGGGTATTGGTTGTTGTCAAGTTGATATTCCACCTATGATGAGGAACATAAGTGTTAATGTTTTTGAATATACTAATTCCAAGGAATCGTTTGGATGTGCACATTCGTTTGTTGTTAAGAATAGATATTATAATTTTTCTCTTTCTGATTTGGATCATTTTTCTCATGAGAAGCTTCCTTTGATTCTTGATTGGAGTGTCGGGAGTAAAAATTGTAAGGTTTCAAAGGGTGAAGATGGTTATGCTTGCAAGGAGAATACTGATTGTGATGATAAGGATATTGATTTTGGTTATCAATGTAAATGTAAGAAAGGTTATGAAGGAAACCCTTATCATCCAGATGGCTGCAAAGACATTGACGAATGTAAGACATCGAACAACACGTGCCTAAGTGATGAACATTGTCGCAACAAAGATGGATTTTACGAATGTTTTTGTCCTCATGGACAATCGGGAAATGGAACATTGGAAGGAGGGTGTAGTAGACGAGATGTAATTACGAAGGTTGCCATCGGAGCAAGTGGTGGACTAATTGTCTTATTTGTGGCGGTTTCTTCTCTATACTTGACGTGCCAAAAAAGGAAACTCATCAAACTAAAACAGAAATTCTTTCAACAAAATGGTGGTTTCATTTTGCAACAACAACTCTCCACAAGAGAAGATACATCTCAATCAGCTCAAATATTCACAGAACAAGAACTTAAAAAAGCCACCAACAATTACGACGAAAGCTTAATCATCGGTAGAGGAGGTTACGGTACAGTCTTCAAAGGAATTTTGTCGGACAATAAAGTCGTTGCTGTCAAAAAATCCAAAATAATAGACGAGAATCAAATCGAGCAATTCATTAACGAGGTAGTTGTCCTGTCTCAAATAAATCATAGGAATGTCGTCAAACTCTTAGGATGTTGTTTGGAAACAGAAGTTCCTTCATTAGTATATGAATTCGTTAGCAACGGTACACTTTTCGATTTCATGCATAGTACAAAAGATAAAGAAAACAATCCAACATGGAAAACACGGCTAAGAATCGCAGCAGAAACTGCCGGAGCTTTATCGTATCTACATTCATCTGCATCAATACCAATCATTCATAGAGATGTTAAGAGTACCAACATTCTCTTGGATGAAAATTACATTACAAAAGTTTCCGATTTCGGAGCATCAAGATTGGTTCCACTTGATCAAACCGAGATAGCAACAATGGTGCAAGGAACACTTGGATACTTAGATCCAGAATATATGCAAACACATCAATTAACTGAGAAAAGTGATGTCTATAGCTTTGGAGTCGTTCTTGCGGAACTTCTAACCGGGGATAAACCGATTTCATTTAATAGGCCTGAAGAGAATATTAGTCTTGCTATGCATTTTTTGTCGTGTTTGAAACAAGATAGAATTTTTGAAGCTATTCAAGTTGGAATTTTGAATGATGATAACAAGAAGGAGATTATGGAGGTTGCTATTCTTGCAGCAAGGTGTTTGAGACTTAGAGGAGATGAAAGACCTAGCATGAAAGAAGTGGCTATGGAGTTGGATGGAATAAGGATAATGGAGAAGCATCCTTGGAATGACACAGACCAAAATTTTGAGGAGAGTCAAAGGTTACTTCATGAGGCATCTTGTAGCTTTTTTGATGAAAATGGTGATAGCTATAATCTTGGTTACACTGTTGGGTATGATAGCTTGAAAGATCAACCATCGATTGCATTGGATGATGGAAGATGA 2223 0.3648 MKLNKNVTLLCTILSVTIYASEQSFSSSLPGCKNTCGDINIPYPFGISESSTPNQGSCFLEPKFNLTCENNTKLIWGDVHVLNISILQGQLELLCFVSSYCDRKNNNQPTLDTASFSISRKENKFITIGCDNYGFIDSNYDEETYTTGCLTRCNGNRRRIENGTCSGIGCCQVDIPPMMRNISVNVFEYTNSKESFGCAHSFVVKNRYYNFSLSDLDHFSHEKLPLILDWSVGSKNCKVSKGEDGYACKENTDCDDKDIDFGYQCKCKKGYEGNPYHPDGCKDIDECKTSNNTCLSDEHCRNKDGFYECFCPHGQSGNGTLEGGCSRRDVITKVAIGASGGLIVLFVAVSSLYLTCQKRKLIKLKQKFFQQNGGFILQQQLSTREDTSQSAQIFTEQELKKATNNYDESLIIGRGGYGTVFKGILSDNKVVAVKKSKIIDENQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPSLVYEFVSNGTLFDFMHSTKDKENNPTWKTRLRIAAETAGALSYLHSSASIPIIHRDVKSTNILLDENYITKVSDFGASRLVPLDQTEIATMVQGTLGYLDPEYMQTHQLTEKSDVYSFGVVLAELLTGDKPISFNRPEENISLAMHFLSCLKQDRIFEAIQVGILNDDNKKEIMEVAILAARCLRLRGDERPSMKEVAMELDGIRIMEKHPWNDTDQNFEESQRLLHEASCSFFDENGDSYNLGYTVGYDSLKDQPSIALDDGR 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04296 740 ProSiteProfiles Protein kinase domain profile. 406 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04296 740 CDD STKc_IRAK 412 680 - -
Vifa3g04296 740 ProSitePatterns Calcium-binding EGF-like domain signature. 283 309 IPR018097 GO:0005509
Vifa3g04296 740 SUPERFAMILY Protein kinase-like (PK-like) 387 677 IPR011009 -
Vifa3g04296 740 Gene3D Phosphorylase Kinase; domain 1 372 481 - -
Vifa3g04296 740 Gene3D Laminin 235 323 - -
Vifa3g04296 740 FunFam Wall-associated receptor kinase 2 482 700 - -
Vifa3g04296 740 Gene3D Transferase(Phosphotransferase) domain 1 482 704 - -
Vifa3g04296 740 SMART egfca_6 283 326 IPR001881 GO:0005509
Vifa3g04296 740 ProSiteProfiles EGF-like domain profile. 283 321 IPR000742 -
Vifa3g04296 740 SUPERFAMILY EGF/Laminin 283 318 - -
Vifa3g04296 740 Pfam Protein kinase domain 408 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04296 740 ProSitePatterns Protein kinases ATP-binding region signature. 412 435 IPR017441 GO:0005524
Vifa3g04296 740 Pfam Wall-associated kinase 163 268 IPR013695 GO:0004674|GO:0016020
Vifa3g04296 740 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 300 311 IPR000152 -
Vifa3g04296 740 FunFam Wall-associated receptor kinase 2 376 481 - -
Vifa3g04296 740 CDD EGF_CA 283 317 - -
Vifa3g04296 740 Pfam Wall-associated receptor kinase galacturonan-binding 32 89 IPR025287 GO:0030247
Vifa3g04296 740 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 689 IPR045274 GO:0007166
Vifa3g04296 740 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Vifa3g04296 740 SMART serkin_6 406 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04296 740 SMART egf_5 236 282 IPR000742 -
Vifa3g04296 740 SMART egf_5 286 326 IPR000742 -
Vifa3g04296 740 Pfam Calcium-binding EGF domain 283 325 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04296 Vifa-Chr3 1232242283 1232245061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04296 13 740 Receptor kinase-like Gene Family AT1G21230 43.484 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vifa3g04296 Pkinase 6.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04296 - - gmx:106795446 966.452