Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04295 ATGACTGCAACGAGAGGAACATTAGGGTACATGGCACCTGAAGTTTTTTCTAGAAATTTCGGGAATATGTCTTATAAGTCAGATATATATAGTTACGGTATGTTGCTGCTGGAGATGGTTGGAGGAATAAAAAATACTAATACAACCATAGGTGAAGAAAATTTCCAAGTTTTGTATCCAGACTGGATCCACGGTTTGCTCCAAGGGGGAGACATACATATTCCAATTGACGAAGAGGGAGATTTTAGAATTGGAAAGAAACTAGAAGTTTTAGGACTTTGGTGCATTCAATGGAACTCTACGGATCGTCCATCTATGAAAAATGTGCTGCAGATGCTTCAAGGAGAGGGAGACAAGTTAAAAGTTCTAACCAATCCTTTCAATCCTTCATCTTCGGCTAATGGATCTGCAAATACTTTTGCAGGATATATGAATTTAGAACTAGATGTGATTCAAGAATTAGACTAG 468 0.3782 MTATRGTLGYMAPEVFSRNFGNMSYKSDIYSYGMLLLEMVGGIKNTNTTIGEENFQVLYPDWIHGLLQGGDIHIPIDEEGDFRIGKKLEVLGLWCIQWNSTDRPSMKNVLQMLQGEGDKLKVLTNPFNPSSSANGSANTFAGYMNLELDVIQELD 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04295 155 Gene3D Transferase(Phosphotransferase) domain 1 1 124 - -
Vifa3g04295 155 ProSiteProfiles Protein kinase domain profile. 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04295 155 Pfam Protein kinase domain 2 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04295 155 SUPERFAMILY Protein kinase-like (PK-like) 2 128 IPR011009 -
Vifa3g04295 155 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 130 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04295 Vifa-Chr3 1231734273 1231734740 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04295 1 133 Receptor kinase-like Gene Family AT5G38280 43.357 4.44e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g04295 Pkinase 3.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04295 - - tpra:123893290 263.462