Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04293 ATGATGCTACTTCTCATGCTGATGCTTAGTATCAATAATGGAAGAAGTATTGATGAGTGTAAAGAGTTGTCTTGTGGACAAGACGAACCGATCATTCGATTTCCCTTCCAACTCGTTAATGAATCATCGCAAGATCAATGTCTTTATCCTGAATTCTGTCTATATTGTACCACTATTCATGGATACAAGGAAACCATGGTTTCACTCCCTACCACTTCAGGTCCAATCAAATTCCTTGTCGAAAAAATAGACTACGAATCAAACCAAATTTTAGTTTGGGACCCGGAAAAGTGCATGGCCACAAAGTTTCTGAAACTTACCACTTCATCATTTCTACCTTACCGATTTTCTCCTGTATCAGAAACAACCGAATATTCTTTCTTCGATTGCTCTTCACTTAGTAGTTCAAAATATGATCAGTCACAAAATAGGATCACCTGTCCAATTTACGGTTCTAATTCTAATCACAGTGTCTTCACGTGGAATCTTGCATCGTGTATCAAGATGTTCGACATCAACTTGCCAATCATGGCCCCAGACCTCACGAATAATTTGCTAGATTTGAGTTGGCTCGAACAAAACTGTACAGTGTGCGAAGCGAAAGGCATGGAGTGCAAATGGAAAAACAACGGTACCAAAGGAGAAACGGAATGTTTTGGTTGCTACAAGAAACGGAAAACAATTCTTCCAAAGTCTCTTATATACAGTGCTACAGGTTCAATTCTTTTGGGGCTTATTCTCATTGCGTTGTTTAAGATATTTCTCTATTTTAGAAAGAAAGAAGAGGATCAAATTAGAGTTGATAAATTTTTAGAGGATTATAGAGCACAAAAGCCAGCTAGATTTTCCTATGCTGATTTAAAAAGAATTACAAATGGATTTAAGGAAAAACTTGGAGAAGGAGCTCACGGAACTGTGTTTAAAGGAAAACTCTCAACTGAGATTCTTGTGGCAGTGAAAATGCTCAATGGTACTCAAGGAGAAGGAAAAGAGTTCATCAATGAAGTAGGAATTATGGGCAAAATCCATCACATAAATGTAGTTCGTTTGATCGGCTTTTGCGCCGATGGAATCCACCGCGCTCTTGTTTACAATTTGTTTTCAAATGGTTCGCTACAAAGTTTCATATTTTCACCAGATAACAAAGACCATTTCTTAGGGTGGGAGAAGTTGCAACAAATTGGTATTGGCATAGCCAAAGGAATTGAGTATCTTCATCAGGGTTGTAACCATCCAATCATTCATTTTGACATCAACCCTCACAATGTTTTGCTAGATGACTCTTTTACTCCAAAGATTTCCGATTTTGGTCTCGCAAAATTATGTTCCAAGAATCTTAGTGTTGTGTCCATGACAGCTGCTAAGGGAACCTTTGGATACATGGCGCCTGAAGTTCTGTCGAGAAATTTTGGAAACGTGTCTCTAAAATCAGATATTTACAGTTATGGAATGTTGTTGTTAGAAATGGTTGGAGGAAGGAAGAATATAGAAACATCATCTGCGGAAAATTTCAATGTCTTGTACCCAGAGTGGATCCACAATTTATTGGAAGGAGATGTACATATTCATATTGAGAATGAAGTTGATTTTAAAATTGCAAAGAAACTTGCAATAGTTGGACTTTGGTGCATTCAATGGCAACCAATAAATCGTCCATCAATAAAATCTGTTGTGCAAATGTTGGAAACAAGAGATGATAGCCAGCTAATTGTACCTCCTAATCCTTTCCAGTCAACGACTTCCATGACCACTAATGAAAAAACCACTTTGGCAAGAAGAACTTTTCAAATGGAAATAATTCAGGAATAA 1809 0.3742 MMLLLMLMLSINNGRSIDECKELSCGQDEPIIRFPFQLVNESSQDQCLYPEFCLYCTTIHGYKETMVSLPTTSGPIKFLVEKIDYESNQILVWDPEKCMATKFLKLTTSSFLPYRFSPVSETTEYSFFDCSSLSSSKYDQSQNRITCPIYGSNSNHSVFTWNLASCIKMFDINLPIMAPDLTNNLLDLSWLEQNCTVCEAKGMECKWKNNGTKGETECFGCYKKRKTILPKSLIYSATGSILLGLILIALFKIFLYFRKKEEDQIRVDKFLEDYRAQKPARFSYADLKRITNGFKEKLGEGAHGTVFKGKLSTEILVAVKMLNGTQGEGKEFINEVGIMGKIHHINVVRLIGFCADGIHRALVYNLFSNGSLQSFIFSPDNKDHFLGWEKLQQIGIGIAKGIEYLHQGCNHPIIHFDINPHNVLLDDSFTPKISDFGLAKLCSKNLSVVSMTAAKGTFGYMAPEVLSRNFGNVSLKSDIYSYGMLLLEMVGGRKNIETSSAENFNVLYPEWIHNLLEGDVHIHIENEVDFKIAKKLAIVGLWCIQWQPINRPSIKSVVQMLETRDDSQLIVPPNPFQSTTSMTTNEKTTLARRTFQMEIIQE 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04293 602 FunFam serine/threonine-protein kinase PBS1-like 259 366 - -
Vifa3g04293 602 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Vifa3g04293 602 Pfam Protein kinase domain 295 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04293 602 ProSiteProfiles Protein kinase domain profile. 292 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04293 602 Gene3D Transferase(Phosphotransferase) domain 1 367 572 - -
Vifa3g04293 602 SUPERFAMILY Protein kinase-like (PK-like) 275 563 IPR011009 -
Vifa3g04293 602 FunFam PR5-like receptor kinase 367 572 - -
Vifa3g04293 602 Gene3D Phosphorylase Kinase; domain 1 266 366 - -
Vifa3g04293 602 PANTHER RUST RESISTANCE KINASE LR10-RELATED 264 581 IPR045874 GO:0004672
Vifa3g04293 602 Pfam Wall-associated receptor kinase galacturonan-binding 20 92 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04293 Vifa-Chr3 1231094816 1231096704 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04293 23 591 Receptor kinase-like Gene Family AT1G66910 33.491 1.08e-95 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g04293 Pkinase 4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04293 - - gmx:102662104 766.148