Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04292 ATGGTGAGAGGTTTCAAAGACAAGTTAGGTGAAGGAGGTTTTGGCACTGTGTTTAAGGGAAATCTCCGTAGTGGACCTTGTGTGGCAATCAAGATGTTGCGTGAGTCAAAAGGTAATGGACATGACTTTATCAGTGAAGTAGCAACCATCGGAAGGATACATCATTTGAATGTTGTACAATTAATTGGATTTTGTGCTGAGGGATCAAAATGTGCTCTTGTTTACGATTTCATGCCTAATGGATCTCTTGATAAATTTATTTTCTCTAAAGAAGGGAGTGCAAGTATAAGCTATAGCCAAATTTTTGACATATCGGTCGGAGTAGCTCGTGGGATTGCTTATCTCCACCACGGATGTGAAATGAAGATTTTGCATTTTGATATCAAGCCTCACAACATTCTTCTTGATGAGAACTTCATCCCAAAAGTCTCTGACTTTGGATTGGCTAAGCTTTATCCAGTAGAGAATAGCATTGTCACAATGACTGCAGCAAGAGGTACAATTGGATATATGGCTCCAGAATTGTTCTACAAAAATATTGGAGGAGTGTCGTATAAGGCCGATGTTTATAGCTTTGGGATGCTTTTGATGGAAATGGCAAGTAAAAGAAAAAACTTAAATGTCCACGCCGAGCATTCAAGCCAGCTTTATTTTCCTTTATGGATTTACGATCAAGTTGAAAACGAGCATGACATAGAAATAGCAGACATCTCTGAAGATGAAAAGAAAATGGTAAAGAAGATGATCATAGTCGCACTTTGGTGTATACAATTGAAACCAGATGATCGACCCTCAATGAACAAGGTCGTGGAGATGCTCGAAGGAGATATTGAAACTCTTGACATGCCTCCGAAGCCAATTCTTTATCCCAATGAAACCATTGGAAATGATCAAAGAAGCAACTCGGACCAAACAATGTCAAGTGATTCTGTGGAAATAGCAACTGATTCTCTTATAGAGAACGTTTCTTGA 972 0.3889 MVRGFKDKLGEGGFGTVFKGNLRSGPCVAIKMLRESKGNGHDFISEVATIGRIHHLNVVQLIGFCAEGSKCALVYDFMPNGSLDKFIFSKEGSASISYSQIFDISVGVARGIAYLHHGCEMKILHFDIKPHNILLDENFIPKVSDFGLAKLYPVENSIVTMTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKRKNLNVHAEHSSQLYFPLWIYDQVENEHDIEIADISEDEKKMVKKMIIVALWCIQLKPDDRPSMNKVVEMLEGDIETLDMPPKPILYPNETIGNDQRSNSDQTMSSDSVEIATDSLIENVS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04292 323 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vifa3g04292 323 PIRSF TyrPK_CSF1-R 5 93 - -
Vifa3g04292 323 PIRSF TyrPK_CSF1-R 80 321 - -
Vifa3g04292 323 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04292 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vifa3g04292 323 MobiDBLite consensus disorder prediction 283 323 - -
Vifa3g04292 323 ProSiteProfiles Protein kinase domain profile. 3 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04292 323 Gene3D Transferase(Phosphotransferase) domain 1 82 282 - -
Vifa3g04292 323 SUPERFAMILY Protein kinase-like (PK-like) 6 274 IPR011009 -
Vifa3g04292 323 Pfam Protein tyrosine and serine/threonine kinase 5 273 IPR001245 GO:0004672|GO:0006468
Vifa3g04292 323 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 299 IPR045874 GO:0004672
Vifa3g04292 323 CDD STKc_IRAK 9 275 - -
Vifa3g04292 323 MobiDBLite consensus disorder prediction 293 323 - -
Vifa3g04292 323 Gene3D Phosphorylase Kinase; domain 1 4 81 - -
Vifa3g04292 323 FunFam PR5-like receptor kinase 78 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04292 Vifa-Chr3 1231062613 1231063584 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04292 1 320 Receptor kinase-like Gene Family AT4G18250 50.456 2.01e-109 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vifa3g04292 PK_Tyr_Ser-Thr 6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04292 - - tpra:123893257 524.242